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Table 3 Overview of genome-wide genomic aberrations of dFFPE sample Nr 10 and the corresponding frozen sample

From: Opening the archives for state of the art tumour genetic research: sample processing for array-CGH using decalcified, formalin-fixed, paraffin-embedded tissue-derived DNA samples

Chr Cyto
band
Start
(bp)*
Stop
(bp)*
Nr of
Probes
Gain (+)/
Deletion (-)
FrozenRP dFFPERP dFFPEULS
1 p36.33 - p33 749422 46786807 1053 + + + +
1 p12 - q23.3 119416284 160645328 539 + NC** + +
2 q33.2 - q37.3 204593489 242169652 575 - + + NC**
4 p16.3 - q13.3 146653 70631034 683 + + + +
5 p15.33 - q35.3 1163403 180617248 2104 + + + +
6 p22.1 - p21.1 26128906 44328148 558 + NC** + +
7 p22.3 - q36.3 289341 158602640 2056 + + + +
9 p24.3 - p13.3 322256 33155616 370 - + + +
9 q33.3 - q34.3 129159725 140128884 293 + NC** + +
10 p15.3 - q26.3 138006 135222624 1739 - + + +
11 p15.4 - q25 2906039 133951511 2213 + + + +
12 q13.11 - q14.1 47340134 56637091 379 + + + +
14 q11.2 - q32.33 19508645 106330010 1394 + + + +
15 q25.3 - q26.1 86577905 91761128 104 + + + +
16 p13.3 - q24.3 36566 88572953 1741 + + + +
17 p13.3 - q25.3 295150 78154619 2163 + + + +
18 p11.32 - q23 170029 76083258 875 + + + +
19 p13.3 - q13.43 231880 63389940 2096 + + + +
20 p13 - q13.33 73854 62363774 1115 + + + +
21 p11.1 - q22.3 10013063 46646924 549 + + + +
22 q11.1 - q13.33 14433273 49525271 833 + + + +
22 q13.1 37688858 37715585 3 - + NC** +
  1. * according to NCBI hg18
  2. ** NC: not called