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Table 3 Overview of genome-wide genomic aberrations of dFFPE sample Nr 10 and the corresponding frozen sample

From: Opening the archives for state of the art tumour genetic research: sample processing for array-CGH using decalcified, formalin-fixed, paraffin-embedded tissue-derived DNA samples

Chr

Cyto

band

Start

(bp)*

Stop

(bp)*

Nr of

Probes

Gain (+)/

Deletion (-)

FrozenRP

dFFPERP

dFFPEULS

1

p36.33 - p33

749422

46786807

1053

+

+

+

+

1

p12 - q23.3

119416284

160645328

539

+

NC**

+

+

2

q33.2 - q37.3

204593489

242169652

575

-

+

+

NC**

4

p16.3 - q13.3

146653

70631034

683

+

+

+

+

5

p15.33 - q35.3

1163403

180617248

2104

+

+

+

+

6

p22.1 - p21.1

26128906

44328148

558

+

NC**

+

+

7

p22.3 - q36.3

289341

158602640

2056

+

+

+

+

9

p24.3 - p13.3

322256

33155616

370

-

+

+

+

9

q33.3 - q34.3

129159725

140128884

293

+

NC**

+

+

10

p15.3 - q26.3

138006

135222624

1739

-

+

+

+

11

p15.4 - q25

2906039

133951511

2213

+

+

+

+

12

q13.11 - q14.1

47340134

56637091

379

+

+

+

+

14

q11.2 - q32.33

19508645

106330010

1394

+

+

+

+

15

q25.3 - q26.1

86577905

91761128

104

+

+

+

+

16

p13.3 - q24.3

36566

88572953

1741

+

+

+

+

17

p13.3 - q25.3

295150

78154619

2163

+

+

+

+

18

p11.32 - q23

170029

76083258

875

+

+

+

+

19

p13.3 - q13.43

231880

63389940

2096

+

+

+

+

20

p13 - q13.33

73854

62363774

1115

+

+

+

+

21

p11.1 - q22.3

10013063

46646924

549

+

+

+

+

22

q11.1 - q13.33

14433273

49525271

833

+

+

+

+

22

q13.1

37688858

37715585

3

-

+

NC**

+

  1. * according to NCBI hg18
  2. ** NC: not called