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Table 1 Type-I error rate using test with unknown haplotypes

From: A Monte Carlo test of linkage disequilibrium for single nucleotide polymorphisms

  HWE HWD
Level Type-I error Inflation factor Type-I error Inflation factor
0.05 0.2859 5.72 0.3116 6.23
0.01 0.2252 22.52 0.2458 24.58
0.001 0.1662 166.2 0.1923 192.3