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Table 2 Power comparison of our test and two previous tests from simulations under HWE

From: A Monte Carlo test of linkage disequilibrium for single nucleotide polymorphisms

  α= 0.05 α= 0.01 α= 0.001
D ' our test comp-LD asym-LD our test comp-LD asym-LD our test comp-LD asym-LD
0 0.0500 0.0540 0.052 0.0100 0.0103 0.0105 0.0010 0.0011 0.0011
0.025 0.1232 0.1209 0.1201 0.0356 0.0324 0.0316 0.0059 0.0052 0.0048
0.05 0.3504 0.3468 0.3452 0.1564 0.1467 0.1455 0.0429 0.0386 0.0372
0.075 0.6696 0.6656 0.6643 0.4238 0.4095 0.4081 0.1810 0.1706 0.1659
0.1 0.8895 0.8847 0.8803 0.7200 0.7083 0.7051 0.4474 0.4325 0.4188
0.125 0.9814 0.9794 0.9726 0.9243 0.9218 0.9194 0.7598 0.7500 0.7259
0.15 0.9982 0.9979 0.9939 0.9875 0.9873 0.9869 0.9319 0.9301 0.9286
0.175 0.9998 0.9996 0.9992 0.9978 0.9975 0.9969 0.9875 0.9868 0.9856
0.2 1.0000 1.0000 1.0000 0.9999 0.9999 0.9997 0.9990 0.9988 0.9987
0.225 1.0000 1.0000 1.0000 1.0000 1.0000 1.0000 0.9998 0.9997 0.9995
0.25 1.0000 1.0000 1.0000 1.0000 1.0000 1.0000 1.0000 1.0000 1.0000