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Table 1 List of top twenty up- and down-regulated genes found differentially expressed by BAM analysis in quiescent cells after E1A expression (Dox-treatment).

From: The dynamics of E1A in regulating networks and canonical pathways in quiescent cells

Accession

Symbol

Definition

Zcut

glog(FC)

Down-Regulated Genes

    

NM_007778.1

Csf1

Mus musculus colony stimulating factor 1 (macrophage)

-66.5094

-1.348

NM_026784.1

Pmvk

Mus musculus phosphomevalonate kinase

-27.5436

-0.562

NM_178879.2

C76566

Mus musculus expressed sequence C76566

-23.5382

-0.482

NM_145529.1

Cstf3

Mus musculus cleavage stimulation factor, 3 pre-RNA, subunit 3

-20.1076

-0.413

NM_023813.2

Camk2d

Mus musculus calcium/calmodulin-dependent protein kinase II, delta

-19.1488

-0.242

NM_018865.1

Wisp1

Mus musculus WNT1 inducible signaling pathway protein 1

-18.7272

-1.396

NM_026772.1

Cdc42ep2

Mus musculus CDC42 effector protein (Rho GTPase binding) 2

-17.9546

-1.340

NM_001033476.1

AI450948

Mus musculus expressed sequence AI450948

-16.851

-1.261

NM_198612.1

BC049816

Mus musculus cDNA sequence BC049816

-16.7728

-1.255

NM_010212

Fhl2

Mus musculus four and a half LIM domains 2

-16.7683

-1.254

NM_007670.2

Cdkn2b

Mus musculus cyclin-dependent kinase inhibitor 2B (p15)

-16.7461

-1.253

NM_013470.1

Anxa3

Mus musculus annexin A3

-16.6472

-1.246

NM_009372.2

Tgif

Mus musculus TG interacting factor

-16.4772

-1.234

NM_010700.1

Ldlr

Mus musculus low density lipoprotein receptor

-15.9324

-0.203

NM_008453.2

Klf3

Mus musculus Kruppel-like factor 3 (basic)

-15.7751

-1.183

NM_016769

Smad3

Mus musculus SMAD family member 3

-15.0449

-1.130

NM_206856.1

Tacc2

Mus musculus transforming, acidic coiled-coil containing protein 2

-14.9903

-1.126

NM_010688.2

Lasp1

Mus musculus LIM and SH3 protein 1

-14.8866

-1.119

NM_007918.2

Eif4ebp1

Mus musculus eukaryotic translation initiation factor 4E binding protein 1

-14.7742

-1.111

NM_147105.1

Olfr978

Mus musculus olfactory receptor 978

-14.6434

-0.304

XM_196166

3300005D01Rik

Mus musculus RIKEN cDNA 3300005D01 gene

-14.4319

-1.086

NM_023118.1

Dab2

Mus musculus disabled homolog 2 (Drosophila)

-14.2169

-1.071

Up-Regulated Genes

    

NM_175554.3

Clspn

Mus musculus claspin homolog

33.3736

1.378

NM_010931.2

Uhrf1

Mus musculus ubiquitin-like, containing PHD and RING finger domains, 1

31.1992

1.382

NM_011241

Rangap1

Mus musculus RAN GTPase activating protein 1

30.7663

1.384

NM_026410.1

Cdca5

Mus musculus cell division cycle associated 5

27.1852

1.387

NM_007633.1

Ccne1

Mus musculus cyclin E1

26.512

1.390

NM_011799.1

Cdc6

Mus musculus cell division cycle 6 homolog (S. cerevisiae)

26.3215

0.239

NM_025674.1

Tcf19

Mus musculus transcription factor 19

25.7018

1.449

NM_175554.3

Clspn

Mus musculus claspin homolog

24.2127

0.400

NM_009387

Tk1

Mus musculus thymidine kinase 1

23.9996

1.468

NM_031405.1

Ars2

Mus musculus arsenate resistance protein 2

22.9415

1.477

NM_008566.1

Mcm5

Mus musculus minichromosome maintenance deficient 5, cell division cycle 46

22.6281

1.502

NM_133851.1

Nusap1

Mus musculus nucleolar and spindle associated protein 1

21.4676

1.529

NM_001039556.1

E130016E03Rik

Mus musculus RIKEN cDNA E130016E03 gene

21.3155

1.552

NM_145150.1

Prc1

Mus musculus protein regulator of cytokinesis 1

20.9803

1.553

NM_008568.1

Mcm7

Mus musculus minichromosome maintenance deficient 7 (S. cerevisiae)

20.8883

1.560

NM_026282.2

2410030K01Rik

Mus musculus RIKEN cDNA 2410030K01 gene

20.879

1.584

NM_007550

Blm

Mus musculus Bloom syndrome homolog (human)

20.5591

1.594

NM_008446.1

Kif4

Mus musculus kinesin family member 4

20.1831

1.679

NM_026640.1

4632417K18Rik

 

19.8413

0.470

NM_017407.1

Spag5

Mus musculus sperm associated antigen 5

19.7147

1.779

NM_021713.1

Myg1

Mus musculus melanocyte prolifeating gene 1

19.4864

1.794

NM_021891.2

Fignl1

Mus musculus fidgetin-like 1

19.4541

1.903

XM_130428.2

2310043D08Rik

 

18.9002

1.948

XM_149213.1

2610318C08Rik

Mus musculus RIKEN cDNA 2610318C08 gene

18.6426

1.961

NM_021288.2

Tyms

Mus musculus thymidylate synthase

18.5966

2.010

NM_177733.2

E2f2

Mus musculus E2F transcription factor 2

18.5614

0.627

NM_007891.1

E2f1

Mus musculus E2F transcription factor 1

18.5401

2.303

NM_011284.2

Rpa2

Mus musculus replication protein A2

18.4827

2.461

  1. Transcripts are ranked by statistical significance (Zcut values) from top to bottom. Direction of change is indicated by the Zcut sign. Generalized-log-fold change values (glog(FC)) represent the corresponding magnitude of regulation of the selected genes.