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Table 1 Nucleotide sequences of BStag primers.

From: A post-labeling method for multiplexed and multicolored genotyping analysis of SSR, indel and SNP markers in single tube with bar-coded split tag (BStag)

Tag name

Sequence

Tm (°C)

F9GAC

5' CTAGTATC AGGACGAC 3'

51.3

F9GTC

5' CTAGTATG AGGACGTC 3'

51.3

F9TAC

5' CTAGTATC AGGACTAC 3'

47.2

F9GCC

5' CTAGTATT AGGACGCC 3'

51.7

F9CCG

5' CTAGTATT AGGACCCG 3'

50.8

F9AGG

5' CTAGTATT AGGACAGG 3'

47.5

  1. Nucleotide sequences of six BStags. One of these tag sequences was attached to the 5' end of a forward primer of a sequence-specific primer. The double underlined three nucleotides represent a 'bar-code' sequence. The single underlined nucleotide corresponds to the mismatched nucleotide in Figure 1A. Estimated melting temperatures (Tm) were obtained with PerlPrimer version 3[13].