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Figure 3 | BMC Research Notes

Figure 3

From: Searching the protein structure database for ligand-binding site similarities using CPASS v.2

Figure 3

An example of a completed CPASS submission page is shown that highlights the enhanced user flexibility in database selection and search criteria. The queried ligand-defined binding site can be manually or automatically defined. The similarity search can be conducted against the entire CPASS database, against a single protein structure or against a user defined list of structures. The search can be further filtered by the type of ligand that defines the ligand binding site. Also, a similarity search can be conducted between two user defined lists of ligand-defined binding sites present in the CPASS database.

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