A CPASS alignment summary page is shown that provides a detailed description of the specific ligand-binding site alignment. An interactive Jmol  representation of the two aligned ligand defined active sites determined by CPASS is displayed. The RMSD between the two ligands, the protein name and ligand name for the comparison ligand-defined binding site are also provided. The associated table identifies the aligned residues and the per residue ΔRMSD
penalties, and the resulting weighted per residue BLOSUM62 score.