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Table 5 Comparison of ARACNE, TINGe and C-ARACNE using synthetic networks.

From: Parallel mutual information estimation for inferring gene regulatory networks on GPUs

  

Time (Sec.)

Specificity

Sensitivity

Precision

TP

TN

FP

FN

m = 500

ARACNE

188.28

0.995

0.255

0.373

98

30575

165

287

 

TINGe

3.74

0.995

0.257

0.404

99

30594

146

286

 

C-ARACNE

1.07

0.996

0.291

0.448

112

30602

138

273

m = 900

ARACNE

637.56

0.994

0.27

0.378

104

30569

171

281

 

TINGe

3.9

0.995

0.265

0.394

102

30583

157

283

 

C-ARACNE

1.3

0.996

0.294

0.454

113

30604

136

272

m = 1200

ARACNE

1312.3

0.995

0.283

0.394

109

30572

168

276

 

TINGe

4.86

0.995

0.273

0.4

105

30581

159

280

 

C-ARACNE

1.46

0.995

0.296

0.44

114

30595

145

271