Table 2 A fragment of the comparison matrix
From: Label-free peptide profiling of Orbitrap™ full mass spectra
Mass MH+ | ms2 triggered | ms2 sequenced | msInspect | Peptrix | Progenesis™ | Sieve™ |
|---|---|---|---|---|---|---|
(for fragmentation) | (proteins found) | Peak intensity (× 103) | Sum peak intensities (× 103) | Peak intensities(× 103) | Peak intensities (× 103) | |
1741.6671 | 0 | 0 | 0 | 0 | 0 | 0 |
1741.7007 | 0 | 0 | 473 | 0 | 0 | 652985 |
1741.7447 | 1 | 1 | 30698 | 73319 | 133568 | 73185 |
1741.7638 | 1 | 0 | 277640 | 995497 | 107051 | 256383 |
1741.8094 | 1 | 0 | 3816 | 222852 | 14080 | 0 |
1741.8397 | 1 | 0 | 41071 | 146578 | 58422 | 78170 |
1741.8707 | 1 | 1 | 26311 | 92368 | 74067 | 2169410 |
1741.9122 | 0 | 0 | 3738 | 19527 | 6889 | 0 |
1741.9355 | 1 | 0 | 202031 | 95472 | 564808 | 273129 |
1741.9807 | 0 | 0 | 0 | 0 | 0 | 0 |
1742.008 | 0 | 0 | 1547 | 0 | 0 | 0 |
1742.0503 | 0 | 0 | 0 | 0 | 0 | 0 |
1742.0852 | 0 | 0 | 0 | 0 | 0 | 0 |
1742.12 | 0 | 0 | 0 | 0 | 0 | 0 |
1742.1472 | 0 | 0 | 0 | 0 | 0 | 101289 |
1742.193 | 0 | 0 | 0 | 0 | 0 | 45510 |
1742.2281 | 0 | 0 | 0 | 2691996 | 0 | 0 |
1742.2594 | 0 | 0 | 0 | 0 | 0 | 0 |
1742.2909 | 0 | 0 | 1407 | 69951 | 0 | 70092 |
1742.3208 | 0 | 0 | 0 | 0 | 0 | 3561843 |
1742.3641 | 0 | 0 | 2474 | 56134 | 0 | 106378 |
1742.3994 | 0 | 0 | 424 | 0 | 0 | 0 |
1742.4336 | 0 | 0 | 0 | 0 | 0 | 0 |
1742.4685 | 0 | 0 | 0 | 0 | 0 | 0 |
1742.5033 | 0 | 0 | 0 | 0 | 0 | 0 |
1742.5382 | 0 | 0 | 0 | 0 | 0 | 0 |
1742.573 | 0 | 0 | 0 | 0 | 0 | 0 |
1742.6079 | 0 | 0 | 0 | 0 | 0 | 0 |
1742.6389 | 0 | 0 | 0 | 0 | 621012 | 0 |
1742.6776 | 0 | 0 | 0 | 0 | 0 | 0 |
1742.7124 | 0 | 0 | 0 | 0 | 0 | 0 |
1742.7512 | 0 | 0 | 460 | 17303 | 0 | 60179 |
1742.7796 | 0 | 0 | 242 | 5676 | 0 | 467398 |
1742.8157 | 1 | 0 | 1002 | 67850 | 82288 | 43121 |
1742.8449 | 0 | 0 | 15846 | 10995 | 5417 | 56105 |
1742.8839 | 1 | 1 | 582 | 102837 | 26609 | 27587 |
1742.9085 | 0 | 0 | 15849 | 120678 | 69898 | 54135 |
1742.95 | 0 | 0 | 0 | 25553 | 8075 | 263965 |
1742.9913 | 0 | 0 | 0 | 0 | 0 | 0 |
1743.0287 | 0 | 0 | 1005 | 0 | 0 | 0 |
1743.0563 | 0 | 0 | 0 | 4248221 | 0 | 0 |
1743.0959 | 0 | 0 | 0 | 0 | 0 | 0 |
1743.1307 | 0 | 0 | 0 | 0 | 0 | 0 |