Table 1 Call rates for blood and buccal cytobrush samples (total number of SNPs = 173,662) as determined using SVS7 and PLINK software programs.
N | Mean Call Rate | SNP with Call Rate = 0 | SNP with Call Rate <0.5 | SNP with Call Rate >0.5 < 0.8 | SNP with Call Rate >0.8 | |
|---|---|---|---|---|---|---|
SVS7 | ||||||
Blood | 146 | 0.98 ± 0.10 | 1547 (0.9%) | 279 (0.16%) | 1101 (0.63%) | 170735 (98.3%) |
Buccal | 82 | 0.97 ± 0.11 | 1548 (0.9%) | 672 (0.38%) | 2773 (1.60%) | 168669 (97.1%) |
PLINK | ||||||
Blood | 146 | 0.98 ± 0.04 | 1547 (0.9%) | 257 (0.15%) | 1152 (0.66%) | 170706 (98.3%) |
Buccal | 82 | 0.97 ± 0.14 | 1548 (0.9%) | 635 (0.37%) | 2789 (1.61%) | 168690 (97.1%) |