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Table 1 Five microsatellite motifs vary in their types and lengths, representing most SSR types in the genome sequences

From: Optimization of sequence alignment for simple sequence repeat regions

Case SSR type SSR repeat Seq. length
(bp)
SSR length (bp) SSR (%)
A Simple-perfect (TA)10 351 54 15.4
B Compound-perfect (TA)10(CA)16 397 100 25.2
C Compound-perfect (TA)10(CA)16(CG)14 457 160 35
D Compound-perfect (TA)10(CA)16(CG)14(TG)18 479 182 38
E Compound-imperfect (GAA)4(GAT)6(GAGGAT)3 769 72 9.4