From: Optimization of sequence alignment for simple sequence repeat regions
Case | SSR type | SSR repeat | Seq. length (bp) | SSR length (bp) | SSR (%) |
---|---|---|---|---|---|
A | Simple-perfect | (TA)10 | 351 | 54 | 15.4 |
B | Compound-perfect | (TA)10(CA)16 | 397 | 100 | 25.2 |
C | Compound-perfect | (TA)10(CA)16(CG)14 | 457 | 160 | 35 |
D | Compound-perfect | (TA)10(CA)16(CG)14(TG)18 | 479 | 182 | 38 |
E | Compound-imperfect | (GAA)4(GAT)6(GAGGAT)3 | 769 | 72 | 9.4 |