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Table 1 Five microsatellite motifs vary in their types and lengths, representing most SSR types in the genome sequences

From: Optimization of sequence alignment for simple sequence repeat regions

Case

SSR type

SSR repeat

Seq. length

(bp)

SSR length (bp)

SSR (%)

A

Simple-perfect

(TA)10

351

54

15.4

B

Compound-perfect

(TA)10(CA)16

397

100

25.2

C

Compound-perfect

(TA)10(CA)16(CG)14

457

160

35

D

Compound-perfect

(TA)10(CA)16(CG)14(TG)18

479

182

38

E

Compound-imperfect

(GAA)4(GAT)6(GAGGAT)3

769

72

9.4