Skip to main content

Advertisement

Figure 9 | BMC Research Notes

Figure 9

From: DOPA: GPU-based protein alignment using database and memory access optimizations

Figure 9

Performance comparison. The figure shows a comparison of the fully optimized version of our implementation (optimized DOPA) with CUDASW++ 2.0 [14], i.e. the fastest GPU-based Smith-Waterman implementation to date, a vectorized S-W implementation on PlayStation3 (SWPS3), BLAST, a less optimized version of our implementation with no equal length sequence sets (less optimized DOPA) and an accelerated and multi-threaded version of ssearch (SSE2).

Back to article page