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Table 1 Performance results with Swiss-Prot

From: DOPA: GPU-based protein alignment using database and memory access optimizations

Query sequence Length Execution time (seconds) Performance (GCUPS)
P02232 144 1.24 21.35
P05013 189 1.65 21.06
P14942 222 1.93 21.15
P07327 375 3.24 21.28
P01008 464 3.99 21.38
P03435 567 4.89 21.32
P27895 1000 8.60 21.38
P07756 1500 12.91 21.36
P04775 2005 17.27 21.35
P19096 2504 21.54 21.37
P28167 3005 25.88 21.35
P0C6B8 3564 30.67 21.37
P20930 4061 34.97 21.35
Q9UKN1 5478 47.15 21.36
  1. The table displays performance results, where execution time in seconds and performance in GCUPS are given for query sequences of varying lengths taken from Swiss-Prot and aligned against the sequences in the same database.