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Table 3 Linkage Disequilibrium (LD) scores of Statistically Significant SNPs Identified in the Same Gene or chromosome

From: Novel human genetic variants associated with extrapulmonary tuberculosis: a pilot genome wide association study

chromosome

Comparison

SNP1

SNP2

D'

LOD

r2

7

ETB vs PPD +

rs10487416

rs10488286

0.406

3.08

0.148

4

Any TB vs PPD +

rs2107005

rs509423

0.345

0.95

0.043

  1. PPD + = Purified protein derivative positive
  2. ETB = Extrapulmonary tuberculosis
  3. Any TB = Pulmonary or extrapulmonary tuberculosis
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BMC Research Notes

ISSN: 1756-0500

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