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Table 3 Details of the mutations found by TILLING in the gene targets screened in the two EMS-mutagenized melon populations, Piel de Sapo (PS) and Charentais (CH)

From: Towards a TILLING platform for functional genomics in Piel de Sapo melons

Gene/population

Amplicon size (bp)

Identified mutants

1

Exon/Intron

Position

AA change

M2 Family

M2 segregation (WT/H/M)2

SIFT score

Cm-eIF4E/PS

500

1

1

Exon 1

A 74 G

R 25 K

F2036

9/7/8

0.00

 

1169

3

2

Exon 2

G 385 A

E 129 K

F57

5/3/0

0.00

   

3

Exon 2

G 465 A

T 155 T

F1880

  
   

4

Intron 2

G/C

 

F959

  

Cm-eIF4E/CH

500

3

5

Exon 1

G 289 A

E 97 K

53

 

0.02

   

6

Exon 1

C 294 T

F 98 F

2532

  
   

7

Intron 1

G/A

 

1420

  
 

1169

11

8

Exon 2

C 401 T

A 134 V

1229

 

0.10

   

9

Exon 2

G 407 A

G 136 E

444

 

0.00

   

10

Intron 2

C/A

 

1287

  
   

11

Intron 2

C/T

 

1115

  
   

12

Intron 3

G/A first nt of intron

splicing

1667

  
   

13

Intron 3

C/T

 

2646

  
   

14

Intron 3

C/T

 

1233

  
   

15

Exon 4

G 616 A

E 206 K

2060

 

0.09

   

16

Intron 4

C/T

 

2035

  
   

17

3'UTR

T/C

 

1368

  
   

18

3'UTR

G/A

 

2163

  
     

222 TGA

    

CmeIF(iso)4E/PS

1014

0

-

      

CmeIF(iso)4E/CH

1014

1

19

Exon 1

G 128 A

R 43 K

M1587

 

1.00

Cm-PDS/PS

1188

2

20

Intron 1

C/T

 

F1151

4/7/4

 
   

21

Exon 2

C 560 T

S 227 F

C384

6/9/0

0.00

Cm-PDS/CH

1188

4

22

Exon 1

C 395 T

S 172 F

1182

 

0.01

   

23

Intron 1

C/T

 

2495

  
   

24

Intron 1

T/C

 

1460

  
   

25

Intron 1

C/T

 

1226

  

Cm-ACO1/PS

933

0

-

      
 

933

1

26

Exon 4

C 728 T

T 243 I

C142

10/6/3

1.00

Cm-NOR/PS

1272

0

       

Cm-DET1/PS

1185

1

27

Exon 2

T 402 A

L 135 L

I76

  
 

776

2

28

Exon 4

G 760 A

V 255 I

F201

2/11/2

0.37

   

29

Exon 4

C 848 T

S 284 L

F1876

2/4/3

0.25

 

1232

2

30

Intron 6

G 2981 A

 

F1248

  
   

31

Intron 7

C 3211 T

 

C487

  

Cm-DHS/PS

578

1

32

Exon 1

G 184 A

V 62 I

F 1728

13/20/0

0.58

 

754

1

33

Exon 3

G 610 A

V 204 I

C348

2/6/0

0.27

  1. 1Number of mutations corresponds to those represented in Figures 1 and 2
  2. 2 For some mutations, it was difficult to obtain homozygous MM plants as seedlings showed altered development.