Table 1 List of highly expressing sperm cell genes in rice.
From: Putative cis-regulatory elements in genes highly expressed in rice sperm cells
S. No | Probe Set ID | Gene ID | Location 5'-3' (Base pair) | Nucleotide Length (Base Pair) | Gene Product Description | Intensity log2 |
|---|---|---|---|---|---|---|
1 | Os.10737.1.S1_at | LOC_Os05g18730.1 | 10854579 - 10847943 | 2169 | generative cell specific-1, putative, expressed | 15.4436 |
2 | Os.54874.1.S1_at | LOC_Os09g27040.1 | 16444436 - 16446851 | 1920 | GEX1, putative, expressed | 12.808 |
3 | OsAffx.17894.1.S1_at | LOC_Os09g25650.1 | 15414547 - 15407935 | 3291 | GEX2, putative, expressed | 14.6951 |
4 | Os.41333.1.A1_at | LOC_Os01g42060.1 | 23845997 - 23849282 | 1908 | expressed protein | 12.4728 |
5 | Os.53049.1.S1_at | LOC_Os04g46490.1 | 27391780 - 27390795 | 810 | aquaporin protein, putative, expressed | 15.7476 |
6 | Os.26448.1.A1_at | LOC_Os03g08070.1 | 4125935 - 4119369 | 2658 | copper-transporting ATPase PAA1, putative, expressed | 11.0327 |
7 | Os.21018.1.S1_at | LOC_Os09g35720.1 | 20547711 - 20541270 | 2397 | generative cell specific-1, putative | 14.8986 |
8 | OsAffx.26224.1.S1_s_at | LOC_Os04g29090.1 | 17091173 - 17086877 | 1989 | FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed | 12.3096 |
9 | Os.18560.1.S1_at | LOC_Os05g01500.1 | 291425 - 296877 | 1641 | tubulin-specific chaperone E, putative, expressed | 11.2132 |
10 | OsAffx.3617.1.S1_at | LOC_Os03g55890.1 | 31822145 - 31818577 | 1950 | ternary complex factor MIP1, putative, expressed | 10.1043 |
11 | OsAffx.2553.1.S1_at | LOC_Os02g09580.1 | 4931298 - 4935969 | 1308 | OsFBX39 - F-box domain containing protein | 9.7882 |
12 | Os.51974.1.S1_at | LOC_Os06g20860.1 | 12052626 - 12049870 | 2580 | paramyosin, putative, expressed | 11.6793 |
13 | Os.50267.1.S1_at | LOC_Os08g34640.1 | 21757895 - 21754127 | 3339 | receptor-like protein kinase precursor, putative, expressed | 12.8324 |
14 | Os.55267.1.S1_at | LOC_Os03g44630.1 | 25129797 - 25129252 | 429 | plastocyanin-like domain containing protein, putative, expressed | 13.8559 |
15 | Os.9559.1.S1_at | LOC_Os03g37570.1 | 20838322 - 20836787 | 633 | expressed protein | 13.1792 |
16 | OsAffx.2680.1.S1_at | LOC_Os02g19180.1 | 11184386 - 11182943 | 915 | ZOS2-06 - C2H2 zinc finger protein | 13.3352 |
17 | Os.52171.1.S1_at | LOC_Os06g38950.1 | 23111994 - 23104560 | 2850 | ABC transporter, ATP-binding protein, putative, expressed | 15.1547 |
18 | Os.32737.1.S1_at | LOC_Os11g08440.1 | 4439113 - 4441939 | 1734 | DnaK family protein, putative, expressed | 12.267 |
19 | Os.38984.1.S1_at | LOC_Os01g23580.1 | 13236319 - 13244856 | 2322 | inorganic H+ pyrophosphatase, putative, expressed | 12.9446 |
20 | Os.23286.1.A1_at | LOC_Os10g02920.1 | 1190765 - 1188954 | 678 | cytochrome b561, putative, expressed | 12.3191 |
21 | OsAffx.26489.1.S1_at | LOC_Os04g46760.1 | 27543355 - 27541189 | 1050 | trehalose phosphatase, putative | 12.2378 |
22 | Os.53437.1.S1_at | LOC_Os03g45980.1 | 25991611 - 25992474 | 864 | expressed protein | 12.459 |
23 | Os.46544.1.A1_at | LOC_Os10g25060.1 | 12830509 - 12828658 | 588 | expressed protein | 13.4751 |
24 | Os.9431.1.A1_a_at | LOC_Os08g16610.1 | 10159371 - 10164170 | 2187 | Rad21/Rec8 like protein, putative, expressed | 15.1214 |
25 | OsAffx.12136.1.S1_at | LOC_Os02g20530.1 | 12106516 - 12110223 | 1812 | hypothetical protein | 12.4087 |
26 | OsAffx.24724.1.S1_x_at | LOC_Os02g44599.1 | 27021672 - 27021157 | 516 | expressed protein | 12.4125 |
27 | Os.4125.1.S1_at | LOC_Os12g38460.1 | 23577850 - 23572909 | 3399 | RNA recognition motif family protein | 12.8627 |
28 | Os.54137.1.S1_at | LOC_Os02g08080.1 | 4268788 - 4264756 | 1428 | expressed protein | 12.6933 |
29 | OsAffx.31616.1.S1_at | LOC_Os12g06480.1 | 3123385 - 3117268 | 2376 | PHD-finger family protein, expressed | 13.5878 |
30 | Os.52287.1.S1_at | LOC_Os02g02800.1 | 1067067 - 1068845 | 762 | AGAP001222-PA, putative, expressed | 12.4595 |
31 | OsAffx.14496.1.S1_at | LOC_Os05g02030.1 | 590266 - 591787 | 582 | OB-fold nucleic acid binding domain containing protein, putative | 11.1188 |
32 | Os.50552.1.S1_at | LOC_Os08g35700.1 | 22526032 - 22519854 | 2706 | Leucine Rich Repeat family protein, expressed | 13.9674 |
33 | OsAffx.28262.1.S1_at | LOC_Os07g04520.1 | 1993662 - 1991627 | 1554 | protein kinase, putative, expressed | 12.6217 |
34 | Os.56612.1.A1_x_at | LOC_Os05g11980.1 | 6852880 - 6843407 | 3624 | timeless protein, expressed | 11.097 |
35 | Os.34965.2.S1_s_at | LOC_Os06g07130.1 | 3407672 - 3417233 | 2043 | SHR5-receptor-like kinase, putative, expressed | 10.7422 |
36 | Os.54810.1.A1_at | LOC_Os08g28080.1 | 17129894 - 17119408 | 2514 | coatomer subunit delta, putative, expressed | 12.4403 |
37 | Os.52821.1.S1_at | LOC_Os11g37200.1 | 21516300 - 21519963 | 777 | transmembrane BAX inhibitor motif-containing protein, putative, expressed | 14.25 |
38 | Os.54486.1.S1_at | LOC_Os05g03320.1 | 1352666 - 1348957 | 1686 | expressed protein | 12.624 |
39 | Os.10491.1.S1_at | LOC_Os03g04690.1 | 2227622 - 2226738 | 885 | expressed protein | 10.5236 |
40 | Os.23535.1.A1_at | LOC_Os08g05820.1 | 3124469 - 3119480 | 1803 | monocopper oxidase, putative, expressed | 15.4961 |