BMC Research Notes

Table 2 Result of experiment one: comparison of different models

From: Towards classifying species in systems biology papers using text mining

		F1			F1-JN			F1-MH
		P	R	F	P	R	F	P	R	F
	fly	0.780	0.929	0.848	0.685	0.890	0.777	0.530	0.808	0.640
NB	mouse	0.810	0.680	0.739	0.697	0.620	0.656	0.683	0.410	0.776
	yeast	0.750	0.727	0.738	0.646	0.515	0.573	0.747	0.657	0.828
	fly	0.780	0.929	0.848	0.659	0.899	0.761	0.638	0.677	0.657
AdaBoost	mouse	0.810	0.680	0.739	0.697	0.620	0.656	0.696	0.550	0.615
	yeast	0.750	0.727	0.738	0.649	0.485	0.555	0.640	0.737	0.685
	fly	0.791	0.919	0.850	0.729	0.869	0.793	0.606	0.838	0.703
Bagging	mouse	0.788	0.670	0.724	0.670	0.670	0.670	0.831	0.490	0.616
	yeast	0.768	0.768	0.765	0.638	0.515	0.570	0.696	0.717	0.706
	fly	0.532	0.667	0.592	0.556	0.354	0.432	0.532	0.667	0.592
Decision Table	mouse	0.515	0.520	0.517	0.388	0.870	0.537	0.515	0.520	0.517
	yeast	0.740	0.545	0.628	0.727	0.081	0.145	0.740	0.545	0.628
	fly	0.637	0.798	0.709	0.500	0.687	0.579	0.341	0.606	0.436
Decision tree	mouse	0.557	0.640	0.595	0.500	0.550	0.524	0.339	0.400	0.367
	yeast	0.729	0.434	0.544	0.596	0.313	0.411	1.000	0.040	0.078
	fly	0.878	0.727	0.796	0.932	0.697	0.798	0.663	0.576	0.603
Logistics Regression	mouse	0.586	0.750	0.658	0.721	0.490	0.583	0.541	0.730	0.621
	yeast	0.705	0.626	0.663	0.513	0.808	0.627	0.740	0.545	0.628
	fly	0.762	0.868	0.802	0.688	0.879	0.764	0.503	0.830	0.621
CRF	mouse	0.789	0.700	0.730	0.725	0.640	0.669	0.766	0.390	0.511
	yeast	0.734	0.725	0.723	0.652	0.566	0.598	0.744	0.650	0.685
	fly	0.925	0.641	0.757	0.619	0.684	0.650	0.200	0.240	0.217
SVM	mouse	0.403	1.000	0.574	0.309	0.406	0.351	0.250	0.147	0.185
	yeast	0.636	0.194	0.297	0.400	0.207	0.273	0.356	1.000	0.525

F1: basic features used to train the model were GN, MH, DT, and JN.
F1-JN: the features used were GN, MH and DT.
F1-MH: the features used were GN, DT, and JN.

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ISSN: 1756-0500

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