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Table 2 Result of experiment one: comparison of different models

From: Towards classifying species in systems biology papers using text mining

   F1 F1-JN F1-MH
   P R F P R F P R F
  fly 0.780 0.929 0.848 0.685 0.890 0.777 0.530 0.808 0.640
NB mouse 0.810 0.680 0.739 0.697 0.620 0.656 0.683 0.410 0.776
  yeast 0.750 0.727 0.738 0.646 0.515 0.573 0.747 0.657 0.828
  fly 0.780 0.929 0.848 0.659 0.899 0.761 0.638 0.677 0.657
AdaBoost mouse 0.810 0.680 0.739 0.697 0.620 0.656 0.696 0.550 0.615
  yeast 0.750 0.727 0.738 0.649 0.485 0.555 0.640 0.737 0.685
  fly 0.791 0.919 0.850 0.729 0.869 0.793 0.606 0.838 0.703
Bagging mouse 0.788 0.670 0.724 0.670 0.670 0.670 0.831 0.490 0.616
  yeast 0.768 0.768 0.765 0.638 0.515 0.570 0.696 0.717 0.706
  fly 0.532 0.667 0.592 0.556 0.354 0.432 0.532 0.667 0.592
Decision Table mouse 0.515 0.520 0.517 0.388 0.870 0.537 0.515 0.520 0.517
  yeast 0.740 0.545 0.628 0.727 0.081 0.145 0.740 0.545 0.628
  fly 0.637 0.798 0.709 0.500 0.687 0.579 0.341 0.606 0.436
Decision tree mouse 0.557 0.640 0.595 0.500 0.550 0.524 0.339 0.400 0.367
  yeast 0.729 0.434 0.544 0.596 0.313 0.411 1.000 0.040 0.078
  fly 0.878 0.727 0.796 0.932 0.697 0.798 0.663 0.576 0.603
Logistics Regression mouse 0.586 0.750 0.658 0.721 0.490 0.583 0.541 0.730 0.621
  yeast 0.705 0.626 0.663 0.513 0.808 0.627 0.740 0.545 0.628
  fly 0.762 0.868 0.802 0.688 0.879 0.764 0.503 0.830 0.621
CRF mouse 0.789 0.700 0.730 0.725 0.640 0.669 0.766 0.390 0.511
  yeast 0.734 0.725 0.723 0.652 0.566 0.598 0.744 0.650 0.685
  fly 0.925 0.641 0.757 0.619 0.684 0.650 0.200 0.240 0.217
SVM mouse 0.403 1.000 0.574 0.309 0.406 0.351 0.250 0.147 0.185
  yeast 0.636 0.194 0.297 0.400 0.207 0.273 0.356 1.000 0.525
  1. F1: basic features used to train the model were GN, MH, DT, and JN.
  2. F1-JN: the features used were GN, MH and DT.
  3. F1-MH: the features used were GN, DT, and JN.