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Table 3 Result of experiment two: comparison of different feature sets

From: Towards classifying species in systems biology papers using text mining

  

F1

F1+TS

F1+OF

  

P

R

F

P

R

F

P

R

F

 

fly

0.78

0.929

0.848

0.97

0.97

0.97

0.792

0.931

0.856

NB

mouse

0.81

0.68

0.739

0.826

0.95

0.884

0.821

0.685

0.747

 

yeast

0.75

0.727

0.738

0.929

0.788

0.852

0.762

0.731

0.746

 

fly

0.762

0.868

0.802

0.965

0.952

0.958

0.771

0.87

0.818

CRF

mouse

0.789

0.7

0.73

0.814

0.878

0.845

0.791

0.71

0.748

 

yeast

0.734

0.725

0.723

0.902

0.786

0.84

0.739

0.73

0.734

  

F1+NT

F1+ADN

F1+TS+OF+NT+ADN

  

P

R

F

P

R

F

P

R

F

 

fly

0.775

0.825

0.799

0.812

0.931

0.867

0.971

0.972

0.971

NB

mouse

0.823

0.621

0.708

0.823

0.712

0.763

0.827

0.953

0.886

 

yeast

0.752

0.723

0.737

0.786

0.987

0.875

0.931

0.791

0.855

 

fly

0.753

0.877

0.81

0.773

0.887

0.826

0.966

0.954

0.96

CRF

mouse

0.865

0.698

0.773

0.792

0.714

0.751

0.817

0.878

0.846

 

yeast

0.729

0.727

0.728

0.762

0.751

0.756

0.901

0.788

0.841

  1. F1: basic features used to train the model were GN, MH, DT, JN.