TY - JOUR AU - Hrynaszkiewicz, I. PY - 2010 DA - 2010// TI - A call for BMC Research Notes contributions promoting best practice in data standardization, sharing, and publication JO - BMC Res Notes VL - 3 UR - https://doi.org/10.1186/1756-0500-3-235 DO - 10.1186/1756-0500-3-235 ID - Hrynaszkiewicz2010 ER - TY - STD TI - The Biomedical Informatics Research Network. [http://nbirn.net] UR - http://nbirn.net ID - ref2 ER - TY - JOUR AU - Keator, D. B. AU - Grethe, J. S. AU - Marcus, D. AU - Ozyurt, B. AU - Gadde, S. AU - Murphy, S. AU - Pieper, S. AU - Greve, D. AU - Notestine, R. AU - Bockholt, H. J. AU - Papadopoulos, P. PY - 2008 DA - 2008// TI - A national human neuroimaging collaboratory enabled by the Biomedical Informatics Research Network (BIRN) JO - IEEE Trans Inf Technol Biomed VL - 12 UR - https://doi.org/10.1109/TITB.2008.917893 DO - 10.1109/TITB.2008.917893 ID - Keator2008 ER - TY - STD TI - XNAT Central. [http://central.xnat.org] UR - http://central.xnat.org ID - ref4 ER - TY - JOUR AU - Marcus, D. S. AU - Olsen, T. R. AU - Ramaratnam, M. AU - Buckner, R. L. PY - 2007 DA - 2007// TI - The Extensible Neuroimaging Archive Toolkit: An informatics platform for managing, exploring, and sharing neuroimaging data JO - Neuroinformatics VL - 5 UR - https://doi.org/10.1385/NI:5:1:11 DO - 10.1385/NI:5:1:11 ID - Marcus2007 ER - TY - STD TI - The Alzheimer's Disease Neuroimaging Initiative. [http://www.adni-info.org] UR - http://www.adni-info.org ID - ref6 ER - TY - JOUR AU - Butcher, J. PY - 2007 DA - 2007// TI - Alzheimer's researchers open the doors to data sharing JO - The Lancet Neurology VL - 6 UR - https://doi.org/10.1016/S1474-4422(07)70118-7 DO - 10.1016/S1474-4422(07)70118-7 ID - Butcher2007 ER - TY - STD TI - The Human Connectome Project. [http://humanconnectome.org] UR - http://humanconnectome.org ID - ref8 ER - TY - JOUR AU - Akil, H. AU - Martone, M. E. AU - Van Essen, D. C. PY - 2011 DA - 2011// TI - Challenges and opportunities in mining neuroscience data JO - Science VL - 331 UR - https://doi.org/10.1126/science.1199305 DO - 10.1126/science.1199305 ID - Akil2011 ER - TY - JOUR AU - Mackenzie-Graham, A. J. AU - Van Horn, J. D. AU - Woods, R. P. AU - Crawford, K. L. AU - Toga, A. W. PY - 2008 DA - 2008// TI - Provenance in neuroimaging JO - NeuroImage VL - 42 UR - https://doi.org/10.1016/j.neuroimage.2008.04.186 DO - 10.1016/j.neuroimage.2008.04.186 ID - Mackenzie-Graham2008 ER - TY - JOUR AU - Fox, P. T. AU - Lancaster, J. L. PY - 2002 DA - 2002// TI - Mapping context and content: The BrainMap model JO - Nat Rev Neurosci VL - 3 UR - https://doi.org/10.1038/nrn789 DO - 10.1038/nrn789 ID - Fox2002 ER - TY - JOUR AU - Laird, A. R. AU - Lancaster, J. L. AU - Fox, P. T. PY - 2005 DA - 2005// TI - BrainMap: The social evolution of a human brain mapping database JO - Neuroinformatics VL - 3 UR - https://doi.org/10.1385/NI:3:1:065 DO - 10.1385/NI:3:1:065 ID - Laird2005 ER - TY - JOUR AU - Laird, A. R. AU - Lancaster, J. L. AU - Fox, P. T. PY - 2009 DA - 2009// TI - Lost in localization? The focus is meta-analysis JO - Neuroimage VL - 48 UR - https://doi.org/10.1016/j.neuroimage.2009.06.047 DO - 10.1016/j.neuroimage.2009.06.047 ID - Laird2009 ER - TY - JOUR AU - Laird, A. R. AU - Eickhoff, S. B. AU - Kurth, F. AU - Fox, P. M. AU - Uecker, A. M. AU - Turner, J. A. AU - Robinson, J. L. AU - Lancaster, J. L. AU - Fox, P. T. PY - 2009 DA - 2009// TI - ALE meta-analysis workflows via the BrainMap database: Progress towards a probabilistic functional brain atlas JO - Front Neuroinformatics VL - 3 UR - https://doi.org/10.3389/neuro.11.023.2009 DO - 10.3389/neuro.11.023.2009 ID - Laird2009 ER - TY - STD TI - FMRIB Software Library. [http://www.fmrib.ox.ac.uk/fsl] UR - http://www.fmrib.ox.ac.uk/fsl ID - ref15 ER - TY - STD TI - Statistical Parametric Mapping. [http://www.fil.ion.ucl.ac.uk/spm] UR - http://www.fil.ion.ucl.ac.uk/spm ID - ref16 ER - TY - STD TI - Analysis of Functional NeuroImages. [http://afni.nimh.nih.gov/afni] UR - http://afni.nimh.nih.gov/afni ID - ref17 ER - TY - JOUR AU - Fox, P. T. PY - 1995 DA - 1995// TI - Spatial normalization origins: Objectives, applications, and alternatives JO - Hum Brain Mapping VL - 3 UR - https://doi.org/10.1002/hbm.460030302 DO - 10.1002/hbm.460030302 ID - Fox1995 ER - TY - CHAP AU - Talairach, J. AU - Tournoux, P. PY - 1988 DA - 1988// TI - Co-planar stereotaxic atlas of the human brain: 3-dimensional proportional system: An approach to cerebral imaging BT - Stuttgart: Georg Thieme ID - Talairach1988 ER - TY - JOUR AU - Collins, D. L. AU - Neelin, P. AU - Peters, T. M. AU - Evans, A. C. PY - 1994 DA - 1994// TI - Automatic 3D intersubject registration of MR volumetric data in standardized Talairach space JO - J Comput Assist Tomogr VL - 18 UR - https://doi.org/10.1097/00004728-199403000-00005 DO - 10.1097/00004728-199403000-00005 ID - Collins1994 ER - TY - JOUR AU - Lancaster, J. L. AU - Tordesillas-GutiƩrrez, D. AU - Martinez, M. AU - Salinas, F. AU - Evans, A. AU - Zilles, K. AU - Mazziotta, J. C. AU - Fox, P. T. PY - 2007 DA - 2007// TI - Bias between MNI and Talairach coordinates analyzed using the ICBM-152 brain template JO - Hum Brain Mapp VL - 28 UR - https://doi.org/10.1002/hbm.20345 DO - 10.1002/hbm.20345 ID - Lancaster2007 ER - TY - JOUR AU - Brett, M. AU - Johnsrude, I. S. AU - Owen, A. M. PY - 2002 DA - 2002// TI - The problem of functional localization in the human brain JO - Nat Rev Neurosci VL - 3 UR - https://doi.org/10.1038/nrn756 DO - 10.1038/nrn756 ID - Brett2002 ER - TY - JOUR AU - Laird, A. R. AU - Robinson, J. L. AU - McMillan, K. M. AU - Tordesillas-GutiƩrrez, D. AU - Moran, S. T. AU - Gonzales, S. M. AU - Ray, K. L. AU - Franklin, C. AU - Glahn, D. C. AU - Fox, P. T. AU - Lancaster, J. L. PY - 2010 DA - 2010// TI - Comparison of the disparity between Talairach and MNI coordinates in functional neuroimaging data: validation of the Lancaster transform JO - NeuroImage VL - 51 UR - https://doi.org/10.1016/j.neuroimage.2010.02.048 DO - 10.1016/j.neuroimage.2010.02.048 ID - Laird2010 ER - TY - STD TI - fMRI Methods Working Group. [http://www.fmrimethods.org] UR - http://www.fmrimethods.org ID - ref24 ER - TY - JOUR AU - Fox, P. T. AU - Lancaster, J. L. PY - 1994 DA - 1994// TI - Neuroscience on the net JO - Science VL - 266 UR - https://doi.org/10.1126/science.7973682 DO - 10.1126/science.7973682 ID - Fox1994 ER - TY - STD TI - BrainMap Publications (1994-Present). [http://brainmap.org/pubs] UR - http://brainmap.org/pubs ID - ref26 ER - TY - JOUR AU - Derrfuss, J. AU - Mar, R. A. PY - 2009 DA - 2009// TI - Lost in localization: The need for a universal coordinate database JO - NeuroImage VL - 48 UR - https://doi.org/10.1016/j.neuroimage.2009.01.053 DO - 10.1016/j.neuroimage.2009.01.053 ID - Derrfuss2009 ER - TY - JOUR AU - Glahn, D. C. AU - Laird, A. R. AU - Ellison-Wright, I. AU - Thelen, S. M. AU - Robinson, J. L. AU - Lancaster, J. L. AU - Bullmore, E. AU - Fox, P. T. PY - 2008 DA - 2008// TI - Meta-analysis of gray matter anomalies in schizophrenia: Application of anatomic likelihood estimation and network analysis JO - Biol Psychiatry VL - 64 UR - https://doi.org/10.1016/j.biopsych.2008.03.031 DO - 10.1016/j.biopsych.2008.03.031 ID - Glahn2008 ER - TY - JOUR AU - Ellison-Wright, I. AU - Glahn, D. C. AU - Laird, A. R. AU - Thelen, S. M. AU - Bullmore, E. T. PY - 2008 DA - 2008// TI - The anatomy of first-episode and chronic schizophrenia: An anatomical likelihood estimation meta-analysis JO - Am J Psych VL - 165 UR - https://doi.org/10.1176/appi.ajp.2008.07101562 DO - 10.1176/appi.ajp.2008.07101562 ID - Ellison-Wright2008 ER - TY - STD TI - Nickl-Jockschat T, Habel U, Michel TM, Manning J, Laird A, Fox PT, Schneider F, Eickhoff SB: Brain structure anomalies in autism spectrum disorder (ASD): A meta-analysis of VBM studies using anatomic likelihood estimation (ALE). Hum Brain Mapp. ID - ref30 ER - TY - STD TI - Oracle Corporation. [http://www.oracle.com] UR - http://www.oracle.com ID - ref31 ER - TY - JOUR AU - Fox, P. T. AU - Laird, A. R. AU - Fox, S. P. AU - Fox, P. M. AU - Uecker, A. M. AU - Crank, M. AU - Koenig, S. F. AU - Lancaster, J. L. PY - 2005 DA - 2005// TI - BrainMap taxonomy of experimental design: Description and evaluation JO - Hum Brain Mapp VL - 25 UR - https://doi.org/10.1002/hbm.20141 DO - 10.1002/hbm.20141 ID - Fox2005 ER - TY - STD TI - Apple iTunes. [http://www.apple.com/itunes] UR - http://www.apple.com/itunes ID - ref33 ER - TY - STD TI - The Neuroimaging Informatics Technology Initiative. [http://nifti.nimh.nih.gov] UR - http://nifti.nimh.nih.gov ID - ref34 ER - TY - STD TI - Thomson Reuters EndNote. [http://endnote.com] UR - http://endnote.com ID - ref35 ER - TY - JOUR AU - Turkeltaub, P. E. AU - Eden, G. F. AU - Jones, K. M. AU - Zeffiro, T. A. PY - 2002 DA - 2002// TI - Meta-analysis of the functional neuroanatomy of single-word reading: Method and validation JO - NeuroImage VL - 16 UR - https://doi.org/10.1006/nimg.2002.1131 DO - 10.1006/nimg.2002.1131 ID - Turkeltaub2002 ER - TY - JOUR AU - Laird, A. R. AU - Fox, M. AU - Price, C. J. AU - Glahn, D. C. AU - Uecker, A. M. AU - Lancaster, J. L. AU - Turkeltaub, P. E. AU - Kochunov, P. AU - Fox, P. T. PY - 2005 DA - 2005// TI - ALE meta-analysis: Controlling the false discovery rate and performing statistical contrasts JO - Hum Brain Mapp VL - 25 UR - https://doi.org/10.1002/hbm.20136 DO - 10.1002/hbm.20136 ID - Laird2005 ER - TY - JOUR AU - Eickhoff, S. B. AU - Laird, A. R. AU - Grefkes, C. AU - Wang, L. E. AU - Zilles, K. AU - Fox, P. T. PY - 2009 DA - 2009// TI - Coordinate-based activation likelihood estimation meta-analysis of neuroimaging data: A random-effects approach based on empirical estimates of spatial uncertainty JO - Hum Brain Mapp VL - 30 UR - https://doi.org/10.1002/hbm.20718 DO - 10.1002/hbm.20718 ID - Eickhoff2009 ER - TY - STD TI - Turkeltaub PE, Eickhoff SB, Laird AR, Fox M, Wiener M, Fox P: Minimizing within-experiment and within-group effects in activation likelihood estimation meta-analyses. Hum Brain Mapp. ID - ref39 ER - TY - STD TI - Eickhoff SB, Bzdok D, Laird AR, Roski C, Caspers S, Zilles K, Fox PT: Co-activation patterns distinguish cortical modules, their connectivity and functional differentiation. Neuroimage. ID - ref40 ER - TY - STD TI - BrainMap Project. [http://www.brainmap.org] UR - http://www.brainmap.org ID - ref41 ER - TY - STD TI - BrainMapWeb. [http://www.brainmap.org:9000/bmapWeb] UR - http://www.brainmap.org:9000/bmapWeb ID - ref42 ER - TY - STD TI - The icbm2tal Transform. [http://www.brainmap.org/icbm2tal] UR - http://www.brainmap.org/icbm2tal ID - ref43 ER - TY - STD TI - Mango. [http://ric.uthscsa.edu/mango] UR - http://ric.uthscsa.edu/mango ID - ref44 ER - TY - JOUR AU - Lancaster, J. L. AU - Rainey, L. H. AU - Summerlin, J. L. AU - Freitas, C. S. AU - Fox, P. T. AU - Evans, A. C. AU - Toga, A. W. AU - Mazziotta, J. C. PY - 1997 DA - 1997// TI - Automated labeling of the human brain: A preliminary report on the development and evaluation of a forward-transform method JO - Hum Brain Mapp VL - 5 UR - https://doi.org/3.0.CO;2-4 DO - 3.0.CO;2-4 ID - Lancaster1997 ER - TY - JOUR AU - Lancaster, J. L. AU - Woldorff, M. G. AU - Parsons, L. M. AU - Liotti, M. AU - Freitas, C. S. AU - Rainey, L. AU - Kochunov, P. V. AU - Nickerson, D. AU - Mikiten, S. A. AU - Fox, P. T. PY - 2000 DA - 2000// TI - Automated Talairach Atlas labels for functional brain mapping JO - Hum Brain Mapp VL - 10 UR - https://doi.org/3.0.CO;2-8 DO - 3.0.CO;2-8 ID - Lancaster2000 ER - TY - STD TI - The Talairach Daemon. [http://www.talairach.org] UR - http://www.talairach.org ID - ref47 ER - TY - STD TI - The Anatomy Toolbox. [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnantomyToolbox/SPMAnantomyToolbox_node.html] UR - http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnantomyToolbox/SPMAnantomyToolbox_node.html ID - ref48 ER - TY - JOUR AU - Eickhoff, S. AU - Stephan, K. E. AU - Mohlberg, H. AU - Grefkes, C. AU - Fink, G. R. AU - Amunts, K. AU - Zilles, K. PY - 2005 DA - 2005// TI - A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data JO - NeuroImage VL - 25 UR - https://doi.org/10.1016/j.neuroimage.2004.12.034 DO - 10.1016/j.neuroimage.2004.12.034 ID - Eickhoff2005 ER - TY - JOUR AU - Eickhoff, S. B. AU - Paus, T. AU - Caspers, S. AU - Grosbras, M. H. AU - Evans, A. AU - Zilles, K. AU - Amunts, K. PY - 2007 DA - 2007// TI - Assignment of functional activations to probabilistic cytoarchitectonic areas revisited JO - NeuroImage VL - 36 UR - https://doi.org/10.1016/j.neuroimage.2007.03.060 DO - 10.1016/j.neuroimage.2007.03.060 ID - Eickhoff2007 ER - TY - JOUR AU - Eickhoff, S. B. AU - Heim, S. AU - Zilles, K. AU - Amunts, K. PY - 2006 DA - 2006// TI - Testing anatomically specified hypotheses in functional imaging using cytoarchitectonic maps JO - NeuroImage VL - 32 UR - https://doi.org/10.1016/j.neuroimage.2006.04.204 DO - 10.1016/j.neuroimage.2006.04.204 ID - Eickhoff2006 ER - TY - STD TI - The Cognitive Paradigm Ontology. [http://www.cogpo.org] UR - http://www.cogpo.org ID - ref52 ER - TY - STD TI - Turner JA, Laird AR: The Cognitive Paradigm Ontology: Design and application. Neuroinformatics. ID - ref53 ER - TY - JOUR AU - Keator, D. B. AU - Wei, D. AU - Gadde, S. AU - Bockholt, J. AU - Grethe, J. S. AU - Marcus, D. AU - Aucoin, N. AU - Ozyurt, I. B. PY - 2009 DA - 2009// TI - Derived data storage and exchange workflow for large-scale neuroimaging analyses on the BIRN Grid JO - Front Neuroinformatics VL - 8 ID - Keator2009 ER - TY - STD TI - The CogPO Wiki. [http://www.wiki.cogpo.org] UR - http://www.wiki.cogpo.org ID - ref55 ER - TY - STD TI - The CogPO, Version 1. [http://www.cogpo.org/ontologies/CogPOver1.owl] UR - http://www.cogpo.org/ontologies/CogPOver1.owl ID - ref56 ER - TY - STD TI - The Neuroscience Information Framework NeuroLex Wiki. [http://neurolex.org/wiki] UR - http://neurolex.org/wiki ID - ref57 ER - TY - STD TI - The National Center for Biomedical Ontology. BioPortal. [http://www.bioportal.ncbo.org] UR - http://www.bioportal.ncbo.org ID - ref58 ER - TY - JOUR AU - Biswal, B. AU - Yetkin, F. Z. AU - Haughton, V. M. AU - Hyde, J. S. PY - 1995 DA - 1995// TI - Functional connectivity in the motor cortex of resting human brain using echo-planar MRI JO - Magn Reson Med VL - 34 UR - https://doi.org/10.1002/mrm.1910340409 DO - 10.1002/mrm.1910340409 ID - Biswal1995 ER - TY - JOUR AU - Xiong, J. AU - Parsons, L. M. AU - Gao, J. H. AU - Fox, P. T. PY - 1999 DA - 1999// TI - Interregional connectivity to primary motor cortex revealed using MRI resting state images JO - Hum Brain Mapp VL - 8 UR - https://doi.org/3.0.CO;2-5 DO - 3.0.CO;2-5 ID - Xiong1999 ER - TY - JOUR AU - Cordes, D. AU - Haughton, V. M. AU - Arfanakis, K. AU - Wendt, G. J. AU - Turski, P. A. AU - Moritz, C. H. AU - Quigley, M. A. AU - Meyerand, M. E. PY - 2000 DA - 2000// TI - Mapping functionally related regions of brain with functional connectivity MR imaging JO - AJNR Am J Neuroradiol VL - 21 ID - Cordes2000 ER - TY - JOUR AU - Robinson, J. L. AU - Laird, A. R. AU - Glahn, D. C. AU - Lovallo, W. R. AU - Fox, P. T. PY - 2010 DA - 2010// TI - Meta-analytic connectivity modelling: Delineating the functional connectivity of the human amygdala JO - Hum Brain Mapp VL - 31 ID - Robinson2010 ER - TY - JOUR AU - Eickhoff, S. AU - Jbabdi, S. AU - Caspers, S. AU - Laird, A. R. AU - Fox, P. T. AU - Zilles, K. AU - Behrens, T. PY - 2010 DA - 2010// TI - Anatomical and functional connectivity of cytoarchitectonic areas within the human parietal operculum JO - J Neurosci VL - 30 UR - https://doi.org/10.1523/JNEUROSCI.5664-09.2010 DO - 10.1523/JNEUROSCI.5664-09.2010 ID - Eickhoff2010 ER - TY - JOUR AU - Laird, A. R. AU - Eickhoff, S. B. AU - Li, K. AU - Robin, D. A. AU - Glahn, D. C. AU - Fox, P. T. PY - 2009 DA - 2009// TI - Investigating the functional heterogeneity of the default mode network using coordinate-based meta-analytic modeling JO - J Neurosci VL - 29 UR - https://doi.org/10.1523/JNEUROSCI.4004-09.2009 DO - 10.1523/JNEUROSCI.4004-09.2009 ID - Laird2009 ER - TY - STD TI - Cauda F, Cavanna AE, D'agata F, Sacco K, Duca S, Geminiani GC: Functional connectivity and coactivation of the nucleus accumbens: A combined functional connectivity and structure-based meta-analysis. J Cogn Neurosci. ID - ref65 ER - TY - JOUR AU - Smith, S. M. AU - Jenkinson, M. AU - Woolrich, M. W. AU - Beckmann, C. F. AU - Behrens, T. E. AU - Johansen-Berg, H. AU - Bannister, P. R. AU - De Luca, M. AU - Drobnjak, I. AU - Flitney, D. E. AU - Niazy, R. K. AU - Saunders, J. AU - Vickers, J. AU - Zhang, Y. AU - De Stefano, N. AU - Brady, J. M. AU - Matthews, P. M. PY - 2004 DA - 2004// TI - Advances in functional and structural MR image analysis and implementation as FSL JO - Neuroimage VL - 23 UR - https://doi.org/10.1016/j.neuroimage.2004.07.051 DO - 10.1016/j.neuroimage.2004.07.051 ID - Smith2004 ER - TY - JOUR AU - Caspers, S. AU - Zilles, K. AU - Laird, A. R. AU - Eickhoff, S. B. PY - 2010 DA - 2010// TI - ALE meta-analysis of action observation and imitation in the human brain JO - Neuroimage VL - 50 UR - https://doi.org/10.1016/j.neuroimage.2009.12.112 DO - 10.1016/j.neuroimage.2009.12.112 ID - Caspers2010 ER - TY - JOUR AU - Friston, K. J. AU - Harrison, L. AU - Penny, W. PY - 2003 DA - 2003// TI - Dynamic causal modelling JO - Neuroimage VL - 19 UR - https://doi.org/10.1016/S1053-8119(03)00202-7 DO - 10.1016/S1053-8119(03)00202-7 ID - Friston2003 ER - TY - JOUR AU - McIntosh, A. AU - Gonzales-Lima, F. PY - 1994 DA - 1994// TI - Structural equation modeling and its application to network analysis in functional brain imaging JO - Hum Brain Mapp VL - 2 UR - https://doi.org/10.1002/hbm.460020104 DO - 10.1002/hbm.460020104 ID - McIntosh1994 ER - TY - JOUR AU - Smith, S. M. AU - Fox, P. T. AU - Miller, K. L. AU - Glahn, D. C. AU - Fox, P. M. AU - Mackay, C. E. AU - Filippini, N. AU - Watkins, K. E. AU - Toro, R. AU - Laird, A. R. AU - Beckmann, C. F. PY - 2009 DA - 2009// TI - Correspondence of the brain's functional architecture during activation and rest JO - Proc Natl Acad Sci USA VL - 106 UR - https://doi.org/10.1073/pnas.0905267106 DO - 10.1073/pnas.0905267106 ID - Smith2009 ER - TY - STD TI - Laird AR, Fox PM, Eickhoff SB, Turner JA, Ray KL, McKay DR, Glahn DC, Beckmann CF, Smith SM, Fox PT: Behavioral interpretations of intrinsic connectivity networks. J Cogn Neurosci. ID - ref71 ER -