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Table 1 Features of Medusa

From: Medusa: A tool for exploring and clustering biological networks

Layout algorithms Clustering Algorithms Features
Grid Predefined clustering Multi-edged connections
Random k-Means Curves, Lines, Arrows
Circular Spectral Interactivity
Hierarchical Affinity Propagation Compatibility with other tools
Force-Directed   Offered as an applet
Spring Embedding   Collapse/Expand node
Distance geometry   Search functionality
Parallel Coordinates   Color schemes
   Isolation of subset of edges