From: Selection of reference genes for qPCR in hairy root cultures of peanut
Gene name | Peanut GenBank Accession | Arabidopsis | Primer pair 5'-3' (forward/reverse) | Length (bp) | |||
---|---|---|---|---|---|---|---|
 |  | Homologous locus | Locus Description/Function | Intron/number of introns | Amino acid identity with peanut (%) |  |  |
TUA3 | EZ722876.1 | AT5G19770.1 | Tubulin α-3/structure (cytoskeleton) | Yes/4 | 98 | ATGGAATGATGCCTAGTGACA/ CTTGCCGACGGTGTAGTG | 239 |
ACT7 | EZ723877.1 | AT5G09810.1 | Actin 7/structure (cytoskeleton) | Yes/4 | 98 | ATGTATGTAGCCATCCAAG/ ACCAGAGTCCAGAACAATA | 75 |
TIP41 | EZ743809.1 | AT4G34270.1 | TIP41-like family protein/membrane protein | Yes/7 | 70 | TTATGATGAGGTAGTCCTATATG/ AACTCTAAGCCAGAATCG | 121 |
SAND | EZ757404.1 | AT2G28390.1 | SAND family protein/membrane protein | Yes/13 | 74 | TTGACGATGATACATACTTG/ TTCACTAAGGACATTGGA | 116 |
H3 | EZ727285.1 | AT3G27360.1 | Histone H3/DNA binding. Nucleosome assembly | None | 100 | ACTAACCTCTGTGCTATT/ TAGAATCTGAATCTGAATCTC | 109 |
TBP2 | EZ735662.1 | AT1G55520.1 | TATA binding protein 2/ TATA-box binding protein. Required for basal transcription | Yes/9 | 92 | GAGTGAGCAACAGTCTAA/ TCTGGTTCATAACTTGAGA | 183 |
RPB1 | EZ751167.1 | AT4G35800.1 | RNA polymerase II large subunit/ DNA-directed RNA polymerase activity, DNA binding | Yes/13 | 91 | CTATTGGAACTGGAGAAT/ AATAACTTGGAGACATCA | 168 |
EFα1 | EZ728203.1 | AT5G60390.1 | Elongation factor α1/ calmodulin binding, translation elongation | Yes/2 | 95 | GGTGTCAAGCAGATGATT/ ACTTCCTTCACGATTTCA | 92 |
RPL8C | EZ730256.1 | AT4G36130.1 | 60S ribosomal protein L8/structural constituent of ribosome | Yes/1 | 92 | GATAACGATACCTCTAGGA/ AACTTGACCAATCATAGC | 84 |
EIF4A1 | EZ730703.1 | AT3G13920.1 | Eukaryotic translation initiation factor 4A1/translation initiation factor | Yes/4 | 92 | AACATCAATATCAACATCATCAT/ AAGAAGTCCTGTCCATCA | 126 |
CYP1 | EZ735209.1 | AT4G34870.1 | Peptidyl-prolyl cis-trans isomerase (cyclophilin)/ protein folding, signal transduction | None | 81 | GTGGCTCTGATACCTTAA/ ATATGTCTTAGTTGTCATTACC | 177 |
GAPDH | EZ732115.1 | AT1G13440.1 | Glyceraldehyde-3-phosphate dehydrogenase/Glycolisis-Gluconeogenesis | Yes/10 | 92 | TCTCTACTACTCACTCTTCT/ TTCTTCCGAATCCGTTAA | 91 |
APT1 | EZ730819.1 | AT1G27450.1 | Adenine phosphoribosyltransferase/Purine metabolism | Yes/6 | 80 | TGCTAACAATTCTCATCT/ AACATAATTCCAGGCTTA | 161 |
UBQ11 | EZ726839.1 | AT4G05050.1 | Ubiquitin 11/ protein binding | Yes/1 | 100 | GACTACAACATCCAGAAG/ GGTAAGGGTCTTAACAAA | 84 |
AP47 | EZ735656.1 | AT5G46630.1 | Clathrin adaptor complexes medium subunit/Endocytic pathway | Yes/12 | 91 | TTTGGTTTGGAAGATTAGGA/ ATGCTGTGAACATTGGAA | 146 |
AT4G33380 | EZ737276.1 | AT4G33380.1 | Expressed sequence | Yes/6 | 77 | CACAAACATCAGGAATGCT/ CAGACGGATGCGAATTTC | 97 |
PP2AA3 | EZ723724.1 | AT1G13320.1 | Protein phosphatase 2A subunit A3/regulatory subunit of protein phosphatase 2A (PP2A) | Yes/12 | 88 | AAGGACAAGGTATATTCAA/ GTCATCCGATACAGATAA | 146 |
HEL | EZ753755.1 | AT1G58050.1 | Helicase domain-containing protein/helicase activity | Yes/33 | 70 | AAAGGTTGAAACAAACAGAGTAT/ CAAGTCCAGTCTGATGCT | 106 |
AT1G31300 | EZ752355.1 | AT1G31300.1 | Expressed sequence | Yes/8 | 74 | TACCACGTCTACCTGCACTAT/ TGGCACTACAATAACTAGCATTTC | 75 |
rolC* | Â | K03313.1 | Root loci C/auxin sensitivity. From pA4 | None | Â | GACCTGTGTTCTCTCTTT/ TCCTTCTTCGTCAATATCC | 147 |
aux1* | Â | DQ782955.1 | Tryptophan 2-monooxygenase/ auxin synthesis pathway. From p15834 | None | Â | TATTTGAAAGTGGGTTTATC/ AATTCCTTCGTAACTCAG | 83 |