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Table 3 Scaffolding contigs from 454 assemblies of 96 BACs by Illumina MPs

From: Sequencing of BAC pools by different next generation sequencing platforms and strategies

  contig pairs MPs contigs length (bp) fraction
gap bridgings, total 1,665 52,234    
gap bridgings, discarded1 1,021 3,846    
gap bridgings, subjected to scaffolding 644 48,388    
conflict free scaffolding 481 40,522 678 8,798,614 0.79
not scaffolded due to missing MPs or conflicts    795 2,318,108 0.21
total    1,473 11,116,722 1.00
  1. 1 discarded as MPs per contig pair/all bridging MPs per BAC ≤ 0.02.