Table 3 Scaffolding contigs from 454 assemblies of 96 BACs by Illumina MPs
From: Sequencing of BAC pools by different next generation sequencing platforms and strategies
contig pairs | MPs | contigs | length (bp) | fraction | |
|---|---|---|---|---|---|
gap bridgings, total | 1,665 | 52,234 | |||
gap bridgings, discarded1 | 1,021 | 3,846 | |||
gap bridgings, subjected to scaffolding | 644 | 48,388 | |||
conflict free scaffolding | 481 | 40,522 | 678 | 8,798,614 | 0.79 |
not scaffolded due to missing MPs or conflicts | 795 | 2,318,108 | 0.21 | ||
total | 1,473 | 11,116,722 | 1.00 |