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Table 1 Benchmarks

From: Expedited batch processing and analysis of transposon insertions

  Size (Mb) Sequence Number Hits Extracted Extraction Time (s)
Anolis carolinensis (AnoCar2.0) 1817 7233 68820 68
Arabidopsis thaliana ( TAIR9.171) 97 1447 9506 4
Aspergillus nidulan (FGSC A4 s06-m03-r02) 31 248 459 1
Homo sapiens
(GRCh37)
3147 47650 254941 118
Loxodonta africana (loxAfr3) 3785 233134 52874 135
Macropus eugenii (Meug_1.1) 3013 616418 24627 145
Oryctolagus cuniculus (OryCun2.0) 3537 215471 53097 121
Petromyzon marinus (petMar1) 1049 108241 11086 35
Zea mays
(B73 RefGen v2)
2095 31719 246699 100
  1. All benchmarks were performed on a Dell PrecisionT3500 with Intel Xeon E5530 2.40 GHz processor and 6 GB of RAM running Windows XP 64. Example organisms are listed in the first column with the genome version listed in parenthesis. The Size column lists the genome database used in megabytes. The Sequence Number column lists the number of FASTA sequences found in the database file. The Hits Extracted column lists the total number of BLAST hits extracted from the database file. The Extraction Time lists the time in seconds required to extract the Hit Objects from the FASTA-formatted genome database.