Skip to main content

Table 1 Phylogenetic classification and nomenclature of poplar PtLIM genes

From: Expression analysis of LIM gene family in poplar, toward an updated phylogenetic classification

Group Subgroup Poplar Arabidopsis Rice Sunflower Expression
profile
αLIM1 XLIM1
(FLIM1)
PtXLIM1a (PtGLIM1a)
PtXLIM1b (PtGLIM1b)
not found not found not found secondary
xylem
  WLIM1 PtWLIM1a
PtWLIM1b
AtWLIM1 OsWLIM1 HaWLIM1 ubiquitous
  PLIM1 not found not found not found HaPLIM1a-SF3
HaPLIM1b
pollen
βLIM1 βLIM1 PtLIM1a (PtβLIM1a)
PtLIM1b (PtβLIM1b)
not found not found HaLIM1 (HaβLIM1) ubiquitous
γLIM2 WLIM2 PtWLIM2a
PtWLIM2b
AtWLIM2a
AtWLIM2b
OsWLIM2 HaWLIM2 ubiquitous
δLIM2 PLIM2 PtPLIM2a
PtPLIM2b
AtPLIM2a
AtPLIM2b
AtPLIM2c
OsPLIM2a
OsPLIM2b
OsPLIM2c
HaPLIM2a pollen
  PLIM2-like
(δLIM2)
PtPLIM2c (PtδLIM2a)
PtPLIM2d (PtδLIM2b)
not found not found HaPLIM2b (HaδLIM2a)
HaPLIM2c (HaδLIM2b)
pollen
  1. The old nomenclature of LIM gene and phylogenetic subgroups [1] is indicated under bracket