PCR approach | Target | Primer assay | Sequence |
---|---|---|---|
Sp1 binding site a | Sp1-a | For: 5'-GCACAGATTTGGCTCGACCTGGA-3' Rev: 5'-GAGCGGGTGCCCTGAGGAGTTAATT-3' | |
TFBS specific | Sp1 binding site b | Sp1-b | For: 5'-TGGCCTTGGGTCCCCGCT-3' Rev: 5'- AGGGCGGGAGGAGGAGGGAC-3 |
PCR | Sp1 binding site c | Sp1-c | For: 5'-TAGACGTCCGGGCAGCCCCC-3' Rev: 5'-TCGGGACTCCGGCCGCCT-3' |
Sp1 binding site d | Sp1-d | For: 5'-AGACCGGACGACAGGCCACCT-3' Rev: 5'-TCCCGATCAATACTGGACGGAGTCAG-3' | |
RsaI cutting site | RsaI | For: 5'-TGCCATTATCCGACGCTGGCTCTA-3' Rev: 5'-GAGCGGGTGCCCTGAGGAGTTAATT-3' | |
BfaI cutting site | BfaI | For: 5'-GCACAGATTTGGCTCGACCTGGA-3' Rev: 5'-AGGGCGGGAGGAGGAGGGAC-3' | |
enzyme digestion | BfaI 2nd cutting site | BfaI 2 | For: 5'-TGGCCTTGGGTCCCCGCT-3' Rev: 5'-CTTGGGTCCCCGCTGCTGGTT-3' |
control | BfaI 3rd cutting site | BfaI 3 | For: 5'-TAGACGTCCGGGCAGCCCCC-3' Rev: 5'-GGTGGCCTGTCGTCCGGTCTG-3' |
SacI cutting site | SacI | For: 5'-AGACCGGACGACAGGCCACCT-3' Rev: 5'-CTTTTCCTCCAGAGCCCGACTCG-3' | |
ChIP control | GAPDH unrelated region | GAPDH | For: 5'-GAGGAAGAGAGAGACCCTCACTG-3' Rev: 5'-AGGGGTCTACATGGCAACTG-3' |