Figure 6From: Accelerating large-scale protein structure alignments with graphics processing unitsPerformance comparison of ppsAlign with different settings of N seed and N iter . ppsAlign is running on NVIDIA Tesla C2050 GPU card with a small target dataset of 17 proteins. The parameter settings of ppsAlign are N iter = {3, 5, 7} and N seed = {10, 30, 50, 70}. (A) N iter = 3. (B) N iter = 5. (C) N iter = 7.Back to article page