w
|
N
|
p
| MegaBLAST | 1 seed | Fast HC | | | |
---|
| | | (contig.) | (spaced) | 2 seeds | 4 seeds | 8 seeds | 16 seeds |
28 | 100 | 0.90 | 39.1436 | 69.3241 | 79.6629 | 87.5674 | 92.7762 |
95.9170
|
28 | 150 | 0.90 | 55.4870 | 87.6426 | 93.4308 |
97.0118
| 98.7430 | 99.5137 |
28 | 200 | 0.90 | 67.4412 | 94.9876 |
97.8936
| 99.2937 | 99.7877 | 99.9409 |
- Using Fast HC, we computed multiple seeds with the same weight as the default seed of MegaBLAST for similarity 90% and N ∈ {100, 150, 200}. The sensitivities of the new seeds are much higher than those of MegaBLAST. The values in bold show that the new 16, 2 and 2 seeds, respectively, reach sensitivities over 95% for N equal to 100, 150, and 200, respectively.