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Table 3 Percentage of loci in each pair of populations in which the null hypothesis that alleles are drawn from the same distribution in all populations has been accepted ( p> 0.05) along with the corresponding average p-values, as a measure of population differentiation

From: Analysis of genetic diversity in Brown Swiss, Jersey and Holstein populations using genome-wide single nucleotide polymorphism markers

Chromosome BS vs. JE p-value JE vs. HO p-value BS vs. HO p-value
1 5.603 0.3471 8.191 0.359 3.228 0.345
2 4.890 0.3367 7.316 0.345 3.658 0.396
3 5.569 0.3475 7.886 0.393 3.049 0.333
4 5.547 0.3155 8.178 0.395 3.239 0.339
5 6.436 0.3239 6.436 0.396 3.644 0.34
6 5.030 0.3423 6.157 0.358 2.897 0.334
7 5.629 0.3166 6.819 0.388 3.066 0.317
8 4.807 0.3475 7.579 0.381 3.378 0.330
9 6.891 0.3896 7.243 0.368 3.773 0.348
10 5.152 0.3454 7.366 0.403 2.985 0.312
11 5.037 0.3898 6.932 0.381 3.420 0.313
12 5.526 0.3698 7.027 0.389 3.483 0.301
13 4.485 0.3478 6.232 0.379 2.912 0.321
14 6.048 0.3748 7.046 0.368 2.466 0.316
15 5.215 0.4109 8.344 0.355 3.313 0.332
16 5.802 0.3395 7.735 0.407 3.244 0.388
17 5.381 0.3859 7.612 0.382 2.822 0.386
18 5.329 0.3559 6.191 0.381 3.683 0.384
19 3.364 0.3772 7.645 0.375 3.211 0.372
20 6.009 0.3741 6.989 0.326 3.005 0.321
21 4.822 0.3203 8.160 0.387 3.932 0.344
22 5.412 0.3059 7.512 0.364 4.281 0.322
23 4.926 0.3519 8.768 0.341 2.365 0.395
24 5.276 0.3356 8.198 0.405 2.110 0.434
25 5.038 0.3228 7.996 0.391 1.972 0.333
26 9.022 0.3509 8.072 0.381 2.374 0.478
27 4.487 0.3763 17.735 0.380 3.098 0.393
28 6.037 0.3634 7.794 0.339 2.305 0.368
29 5.865 0.3257 7.820 0.365 3.226 0.333
Average 5.470 0.351 7.827 0.375 3.108 0.353