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Table 3 Percentage of loci in each pair of populations in which the null hypothesis that alleles are drawn from the same distribution in all populations has been accepted ( p> 0.05) along with the corresponding average p-values, as a measure of population differentiation

From: Analysis of genetic diversity in Brown Swiss, Jersey and Holstein populations using genome-wide single nucleotide polymorphism markers

Chromosome

BS vs. JE

p-value

JE vs. HO

p-value

BS vs. HO

p-value

1

5.603

0.3471

8.191

0.359

3.228

0.345

2

4.890

0.3367

7.316

0.345

3.658

0.396

3

5.569

0.3475

7.886

0.393

3.049

0.333

4

5.547

0.3155

8.178

0.395

3.239

0.339

5

6.436

0.3239

6.436

0.396

3.644

0.34

6

5.030

0.3423

6.157

0.358

2.897

0.334

7

5.629

0.3166

6.819

0.388

3.066

0.317

8

4.807

0.3475

7.579

0.381

3.378

0.330

9

6.891

0.3896

7.243

0.368

3.773

0.348

10

5.152

0.3454

7.366

0.403

2.985

0.312

11

5.037

0.3898

6.932

0.381

3.420

0.313

12

5.526

0.3698

7.027

0.389

3.483

0.301

13

4.485

0.3478

6.232

0.379

2.912

0.321

14

6.048

0.3748

7.046

0.368

2.466

0.316

15

5.215

0.4109

8.344

0.355

3.313

0.332

16

5.802

0.3395

7.735

0.407

3.244

0.388

17

5.381

0.3859

7.612

0.382

2.822

0.386

18

5.329

0.3559

6.191

0.381

3.683

0.384

19

3.364

0.3772

7.645

0.375

3.211

0.372

20

6.009

0.3741

6.989

0.326

3.005

0.321

21

4.822

0.3203

8.160

0.387

3.932

0.344

22

5.412

0.3059

7.512

0.364

4.281

0.322

23

4.926

0.3519

8.768

0.341

2.365

0.395

24

5.276

0.3356

8.198

0.405

2.110

0.434

25

5.038

0.3228

7.996

0.391

1.972

0.333

26

9.022

0.3509

8.072

0.381

2.374

0.478

27

4.487

0.3763

17.735

0.380

3.098

0.393

28

6.037

0.3634

7.794

0.339

2.305

0.368

29

5.865

0.3257

7.820

0.365

3.226

0.333

Average

5.470

0.351

7.827

0.375

3.108

0.353