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Table 4 Percentage of loci in each pair of populations in which the null hypothesis that genotypes are drawn from the same distribution in all populations has been accepted ( p> 0.05) along with the corresponding average p-values, as a measure of population differentiation

From: Analysis of genetic diversity in Brown Swiss, Jersey and Holstein populations using genome-wide single nucleotide polymorphism markers

Chromosome

BS vs. JE

p-value

JE vs. HO

p-value

BS vs. HO

p-value

1

7.217

0.338

8.191

0.080

4.903

0.369

2

7.577

0.309

6.980

0.099

5.151

0.398

3

7.642

0.365

7.886

0.108

4.472

0.377

4

7.206

0.331

17.085

0.143

4.575

0.363

5

8.140

0.346

6.436

0.163

5.395

0.371

6

6.962

0.357

6.157

0.188

4.185

0.361

7

8.238

0.336

6.819

0.205

3.982

0.308

8

7.016

0.357

7.579

0.225

5.154

0.363

9

8.903

0.374

7.243

0.254

5.483

0.371

10

8.089

0.346

7.366

0.287

4.959

0.315

11

6.654

0.386

6.932

0.321

5.129

0.355

12

7.447

0.383

7.027

0.351

5.646

0.335

13

6.465

0.361

6.814

0.383

4.368

0.353

14

7.575

0.370

7.046

0.415

3.934

0.311

15

7.055

0.404

8.282

0.446

4.663

0.361

16

8.110

0.388

7.798

0.486

4.554

0.404

17

7.349

0.392

7.677

0.521

5.249

0.357

18

6.897

0.365

6.191

0.556

4.232

0.392

19

5.963

0.419

7.645

0.596

5.122

0.365

20

7.120

0.408

6.989

0.627

4.311

0.333

21

7.122

0.306

8.160

0.665

5.935

0.386

22

7.027

0.342

7.512

0.682

5.654

0.418

23

6.995

0.381

8.768

0.710

4.729

0.334

24

6.818

0.381

8.198

0.748

3.247

0.453

25

7.229

0.374

7.886

0.781

3.614

0.270

26

8.072

0.336

8.547

0.818

3.799

0.412

27

8.974

0.364

7.799

0.854

4.167

0.426

28

9.330

0.355

8.342

0.895

4.281

0.324

29

7.234

0.427

7.722

0.901

5.279

0.333

Average

7.463

0.365

7.830

0.466

4.696

0.363