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Table 4 Summary of repetitive sequences among the sugarcane BESs

From: A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome

Repeat Element Number of elements Length (bp) % of Total Bases
Transposable Element 293 160624 44.29
RNA transposon 234 142693 39.35
LTR Retrotransposon 221 136899 37.76
Copia 96 65873 18.17
Gypsy 123 70697 19.50
Non-LTR Retrotransposon 13 5794 1.59
L1 7 2626 0.72
RTE 4 2943 0.81
SINE 2 225 0.06
SINE2/tRNA 2 225 0.06
DNA transposon 59 17931 4.94
EnSpm 13 5358 1.48
Harbinger 11 2728 0.75
Helitron 2 1197 0.33
MuDr 6 2515 0.69
hAT 9 3111 0.86
Integrated Virus 2 1231 0.34
Caulimoviridae 2 1231 0.34
Simple Repeat 3 1923 0.53
Satellite 3 1923 0.53
Total 298 163778 45.16