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Table 1 Identified LRLD-SNP pairs and LDGIs (with r 2 ≥0.8)

From: LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs

Population

# Individuals

# LRLD-SNP pairs

# Affected SNPs

# LDGIs

# Affected genes

PLINK (P< 0.01)

     

Phase II

     

 CEU

30

66343

44756

23425

14444

Phase III

     

 CEU cluster 1

27

34940

28817

18569

11644

 CEU cluster 2

40

30353

28082

15333

11308

 CHD cluster 1

22

44513

29109

24675

11934

 CHD cluster 2

31

30981

27563

15425

11161

 JPT + CHB cluster 1

28

34672

28024

18212

11401

 JPT + CHB cluster 2

22

48626

29360

29751

12014

 LWK

23

42305

23398

35808

10545

 MKK cluster 1

28

28924

22740

21185

10056

 MKK cluster 2

24

54795

25086

47884

11203

 MKK cluster 3

21

98150

27043

89007

11952

 MKK cluster 4

22

63718

25598

53623

11465

 YRI cluster 1

29

19116

20874

13011

9246

 YRI cluster 2

28

22127

21138

16279

9390

PLINK ( P < 0.001)

     

Phase II

     

 CEU

48

61699

43945

21112

14181

 JPT + CHB

20

117251

44754

61435

14792

 YRI cluster 1

22

86494

38786

65698

13775

 YRI cluster 2

21

98239

39389

75825

13950

Phase III

     

 ASW

25

18880

21631

11922

9432

 CEU cluster 1

62

29924

27834

14997

11208

 CEU cluster 2

41

30586

27967

15302

11269

 CHD cluster 1

33

31456

27684

15283

11224

 CHD cluster 2

21

31931

27598

15821

11215

 CHI cluster 1

23

48723

30147

29355

12304

 CHI cluster 2

21

56926

30705

37185

12543

 JPT+CHB cluster 1

28

34509

28021

19004

11404

 JPT+CHB cluster 2

30

33894

28111

17153

11424

 JPT+CHB cluster 3

27

36917

28193

19958

11495

 JPT+CHB cluster 4

23

44475

29077

25505

11928

 JPT+CHB cluster 5

61

32011

27861

15491

11229

 LWK cluster 1

21

61580

24684

54472

11194

 LWK cluster 2

33

15850

19800

10436

8729

 MEX

25

36330

29249

22032

11998

 MKK cluster 1

41

17272

20819

10688

8997

 MKK cluster 2

26

30057

22480

24739

10124

 MKK cluster 3

25

52057

25081

44570

11104

 MKK cluster 4

27

36459

23314

28450

10368

 MKK cluster 5

24

41993

24359

33284

10779

 TSI cluster 1

32

31021

28490

16191

11517

 TSI cluster 2

30

32289

28501

16722

11535

 YRI cluster 1

31

18261

20636

12029

9185

 YRI cluster 2

37

15825

19577

9889

8602

 YRI cluster 3

22

45628

23996

39632

10846

Sum

 

801340

94876

646203

21240