Figure 2

Plots of the relative position of predicted genes between the 12Xv1 and the 8X coverage assemblies of the grapevine genome sequence. Color code representing chromosomes and genes is identical in the 4 images. Axes represent percentage of the total length of each chromosome. Labels indicate chromosome and corresponding assembly. A) Relative position of genes on the same chromosome number in both assemblies. Colors of the links are identical to the 12X chromosome of origin. B) Relative position of genes in the unknown chromosome in at least one assembly. Small chromosomes marked with “r” represent random chromosomes and were arbitrarily set to 1/10th the regular chromosome size. Unknown chromosomes are magnified 20X relative to regular chromosomes. Black links represent genes belonging to the unknown chromosome in both assemblies. Grey links represent genes belonging to the unknown chromosome in only one assembly. C) Relative position of genes in two different chromosomes in the two assemblies. Small chromosomes marked with “r” represent random chromosomes and were arbitrarily set to 1/10th the regular chromosome size. Colors of the links are identical to the 12X chromosome of origin. D) Relative position of genes on the same chromosome number in both assemblies. To avoid confusion within similar colors, stars represent genes from a odd numbered chromosome and circles represent genes from a chromosome with an even number.