Table 2 Panther gene ontology (GO) analysis showing the percentage of the number (#) of genes for each GO term based on the total number of genes for each of the three data sets analyzed
Data set | (A) E12.5 entire embryos/4 strains | (B) E12.5 eviscerated embryos/4 strains | (C) E12.5 eviscerated embryos/11 strains | |||
|---|---|---|---|---|---|---|
GO Categories | # genes | % total | # genes | % total | # genes | % total |
apoptosis (GO:0006915) | 7 | 2.4 | 109 | 5.3 | 287 | 5.7 |
cell adhesion (GO:0007155) | 14 | 4.7 | 213 | 10.3 | 524 | 10.4 |
cell communication (GO:0007154) | 60 | 20.3 | 625 | 30.3 | 1508 | 30 |
cell cycle (GO:0007049) | 30 | 10.1 | 206 | 10 | 541 | 10.8 |
cellular component organization (GO:0016043) | 14 | 4.7 | 183 | 8.9 | 401 | 8 |
cellular process (GO:0009987) | 92 | 31.1 | 831 | 40.3 | 2011 | 40 |
developmental process (GO:0032502) | 34 | 11.5 | 450 | 21.8 | 1047 | 20.8 |
generation of precursor metabolites and energy (GO:0006091) | 5 | 1.7 | 27 | 1.3 | 75 | 1.5 |
homeostatic process (GO:0042592) | 4 | 1.4 | 27 | 1.3 | 56 | 1.1 |
immune system process (GO:0002376) | 32 | 10.8 | 370 | 18 | 892 | 17.7 |
localization (GO:0051179) | 1 | 0.3 | 7 | 0.3 | 24 | 0.5 |
metabolic process (GO:0008152) | 154 | 52 | 935 | 45.4 | 2345 | 46.6 |
regulation of biological process (GO:0050789) | 1 | 0.3 | 6 | 0.3 | 23 | 0.5 |
reproduction (GO:0000003) | 15 | 5.1 | 91 | 4.4 | 216 | 4.3 |
response to stimulus (GO:0050896) | 21 | 7.1 | 237 | 11.5 | 585 | 11.6 |
system process (GO:0050896) | 27 | 9.1 | 340 | 16.5 | 774 | 15.4 |
transport (GO:0006810) | 37 | 12.5 | 377 | 18.3 | 882 | 17.5 |
Total # genes | 296 | n/a | 2060 | n/a | 5027 | n/a |
Total # processed hits | 548 | n/a | 5034 | n/a | 12191 | n/a |