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Table 2 Panther gene ontology (GO) analysis showing the percentage of the number (#) of genes for each GO term based on the total number of genes for each of the three data sets analyzed

From: Mouse strain specific gene expression differences for illumina microarray expression profiling in embryos

Data set (A) E12.5 entire embryos/4 strains (B) E12.5 eviscerated embryos/4 strains (C) E12.5 eviscerated embryos/11 strains
GO Categories # genes % total # genes % total # genes % total
apoptosis (GO:0006915) 7 2.4 109 5.3 287 5.7
cell adhesion (GO:0007155) 14 4.7 213 10.3 524 10.4
cell communication (GO:0007154) 60 20.3 625 30.3 1508 30
cell cycle (GO:0007049) 30 10.1 206 10 541 10.8
cellular component organization (GO:0016043) 14 4.7 183 8.9 401 8
cellular process (GO:0009987) 92 31.1 831 40.3 2011 40
developmental process (GO:0032502) 34 11.5 450 21.8 1047 20.8
generation of precursor metabolites and energy (GO:0006091) 5 1.7 27 1.3 75 1.5
homeostatic process (GO:0042592) 4 1.4 27 1.3 56 1.1
immune system process (GO:0002376) 32 10.8 370 18 892 17.7
localization (GO:0051179) 1 0.3 7 0.3 24 0.5
metabolic process (GO:0008152) 154 52 935 45.4 2345 46.6
regulation of biological process (GO:0050789) 1 0.3 6 0.3 23 0.5
reproduction (GO:0000003) 15 5.1 91 4.4 216 4.3
response to stimulus (GO:0050896) 21 7.1 237 11.5 585 11.6
system process (GO:0050896) 27 9.1 340 16.5 774 15.4
transport (GO:0006810) 37 12.5 377 18.3 882 17.5
Total # genes 296 n/a 2060 n/a 5027 n/a
Total # processed hits 548 n/a 5034 n/a 12191 n/a
  1. A (entire embryos of four strains (C57BL/6J, 129 S2/SvHsd, FVB/NHan TMHsd and Hsd:ICR(CD-1)® at E12.5), B (eviscerated embryos of four strains (C57BL/6J, 129 S2/SvHsd, FVB/NHan TMHsd and Hsd:ICR(CD-1)® at E12.5) and C (eviscerated embryos of 11 strains (129 S2/SvHsd; FVB/NHan TMHsd; C3H/HeNHs; CBA/JHsd; BALB/cOlaHsd; C.B-17/IcrHanTMHsd-Prkdcscid; C57BL/6J; B6; SJL-Tg(Col2a1-cre)1Bhr/J; 129 S4/SvJaeSor-Gt(Rosa)26Sortm1(FLP1)Dym/J; C57BL/6-Tg(Zp3-cre)93Knw/J; Hsd:ICR(CD-1)®) at E12.5.