Table 4 Comparison of Arapan-S with all the assemblers on Three Genomes Composed of eight Segments
From: Arapan-S: a fast and highly accurate whole-genome assembly software for viruses and small genomes
| Species | Assembler | Contigs ≥ 400 bp | Total Length | Mean size (bp) | N50 (bp) | Largest contig (bp) | Genome coverage (%) |
|---|---|---|---|---|---|---|---|
|
Influenza A Virus
A/Memphis/1/71(H3N2) | Arapan-S | 8 | 12598 | 1574.75 | 1584 | 2311 | 94.03 |
| ABySS | 14 | 12897 | 921.21 | 1280 | 1801 | 96.27 | |
| SSAKE | 1 | 555 | 555.00 | - | 555 | 4.14 | |
| Velvet | 14 | 10774 | 769.57 | 789 | 1781 | 80.42 | |
| QSRA | 17 | 12570 | 739.41 | 700 | 1828 | 93.83 | |
| Minimus | 9 | 13156 | 1461.78 | 2242 | 98.20 | ||
| Mira | 14 | 14399 | 1028.50 | 1396 | 2080 | 107.48 | |
|
Influenza A Virus
A/Swine/Colorado/1/77/(H3N2) | Arapan-S | 8 | 13120 | 1640 | 2151 | 2310 | 99.13 |
| ABySS | 9 | 12478 | 1386.44 | 1634 | 2262 | 93.79 | |
| SSAKE | 6 | 4287 | 714.50 | - | 1409 | 32.22 | |
| Velvet | 12 | 9783 | 815.25 | 494 | 1867 | 73.53 | |
| QSRA | 16 | 9400 | 587.50 | 468 | 1200 | 70.65 | |
| Minimus | 8 | 13325 | 1665.62 | 2199 | 2309 | 100.16 | |
| Mira | 10 | 14678 | 1467.80 | 1780 | 2371 | 110.33 | |
|
Influenza A Virus
A/Weiss/43/(H1N1) | Arapan-S | 8 | 13300 | 1662.50 | 2194 | 2313 | 99.47 |
| ABySS | 11 | 13108 | 1191.64 | 1716 | 2274 | 98.03 | |
| SSAKE | 3 | 1616 | 538.67 | - | 572 | 12.09 | |
| Velvet | 9 | 9764 | 1084.89 | 1006 | 1696 | 73.02 | |
| QSRA | 16 | 11755 | 734.69 | 573 | 1916 | 87.91 | |
| Minimus | 8 | 13369 | 1671.12 | 2194 | 2313 | 99.98 | |
| Mira | 11 | 15139 | 1376.27 | 1583 | 2359 | 113.22 |