Skip to main content

Table 6 Characteristics of the earliness QTL detected using the ‘Romanesco C3’ (C3) and the ‘Altilis 41’ (A41) maps

From: Genetic mapping and identification of QTL for earliness in the globe artichoke/cultivated cardoon complex

Precocity trait

Map

LG

QTL

2008

2009

GW

Locus

cM

LOD

% var

Add

GW

Locus

cM

LOD

% var

Add

Main head

(eMH)

C3

C3_1

eMH.C3_1

3.6

rCELMS-40

105.1

14.7

47.9

−10.5

3.3

rCELMS-40

105.1

9.62

38.1

−11.6

 

C3_9

eMH.C3_9

 

CyEM_10

29.8

4.8

10.5

−4.5

 

CyEM_10

29.8

3.4

7.6

−4.0

 

C3_8

eMH.C3_8

 

CyEM_173

81.0

4.1

8.9

−4.3

 

CyEM_2

81.8

3.6

6.8

−3.5

 

C3_12

eMH.C3_12

 

e39/m50-690

41.2

3.6

6.6

−3.6

 

e35/m50-302

47.2

3.3

6.1

−3.1

 

C3_2

eMH.C3_2

 

-

-

-

-

-

 

e32/t81-380

58

3.9

13

6.4

A41

Alt_2

eMH.Alt_2

3.3

e38/m47-158

64.3

6.2

41.4

−8.9

3.2

e38/m47-158

64.3

7.9

32.9

−10.9

 

Alt_2

eMH.Alt_2b

 

p12/m62-150

29.3

3.6

10.7

−5.3

 

p12/m62-150

29.3

3.3

8.9

−5.7

 

Alt_15

eMH.Alt_15

 

CyEM_248

20.9

3.3

8.9

4.2

 

CyEM_144

20.3

3.2

7.1

5.1

 

Alt_4

eMH.Alt_4

 

-

-

-

-

-

 

e32/t82-90

35.4

3.4

9.8

5.2

First order head

(eFOH)

C3

C3_1

eFOH.C3_1

3.4

e33/t89-430

104.0

8.9

31.0

−7.1

3.1

rCyEM_223

106.1

7.6

29.9

−10.5

 

C3_9

eFOH.C3_9

 

CyEM_10

29.8

3.8

8.1

−4.1

 

CyEM_10

29.8

3.5

6.6

−5.1

 

C3_12

eFOH.C3_12

 

e39/m50-690

41.2

3.4

5.6

−3.1

 

e35/m50-302

47.2

3.1

5.5

−4.8

 

C3_2

eFOH.C3_2

 

-

-

-

-

-

 

e42/m50-176

55.0

3.2

5.1

−4.3

A41

Alt_2

eFOH.Alt_2

3.0

e38/m47-158

64.3

7.2

25.6

−6.7

3.0

e38/m47-158

64.3

6.3

26.7

−10.2

 

Alt_2

eFOH.Alt_2b

 

aCyEM_12

20.5

3.6

11.0

3.8

 

p12/m62-164

32.1

3.4

8.3

−5.4

 

Alt_15

eFOH.Alt_15

 

CyEM_248

20.9

3.2

9.1

3.3

 

CyEM_144

20.3

3.6

7.8

5.3

 

Alt_6

eFOH.Alt_6

 

cyre5/m47-160

1.5

3.0

8.3

3.1

 

cyre5/m47-160

1.5

3.0

5.7

3.4

 

Alt_4

eFOH.Alt_4

 

-

-

-

-

-

 

e33/t89-490

36.0

3.0

6.3

4.2

Second order head

(eSOH)

C3

C3_1

eSOH.C3_1

3.4

e38/t80-630

99.7

7.1

32.2

−9.7

3.2

e32/t81-98

98.0

5.6

22.4

−9.8

 

C3_12

eSOH.C3_12

 

e35/m50-302

47.2

3.4

15.1

−7.1

 

e35/m50-302

47.2

3.4

18.0

−9.2

 

C3_2

eSOH.C3_2

 

-

-

-

-

-

 

e38/m50-108

59.2

3.2

7.8

5.2

A41

Alt_2

eSOH.Alt_2

3.1

e38/m47-158

64.3

4.9

19.0

−7.6

3.2

e38/m47-158

64.3

6.3

21.4

−8.2

 

Alt_15

eSOH.Alt_15

 

CyEM_248

20.9

3.1

5.9

3.1

 

CyEM_144

20.3

3.5

9.1

6.4

 

Alt_6

eSOH.Alt_6

 

cyre5/m47-160

1.5

3.1

7.4

3.9

 

cyre5/m47-160

1.5

3.2

6.1

4.1

 

Alt_4

eSOH.Alt_4

 

-

-

-

-

-

 

e33/t89-490

36.0

3.2

5.9

4.1

  1. Each QTL name is formed by the abbreviated form of the trait followed by the relevant LG. The table indicates genome-wide LOD thresholds (GW) as determined by a permutation test at P ≤ 0.05, the closest linked markers (Locus) and their map location (cM), the estimated LODs at the QTL peak (LOD), the proportions of the total variance explained (% var), and the additive effects (Add).