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Table 6 Characteristics of the earliness QTL detected using the ‘Romanesco C3’ (C3) and the ‘Altilis 41’ (A41) maps

From: Genetic mapping and identification of QTL for earliness in the globe artichoke/cultivated cardoon complex

Precocity trait Map LG QTL 2008 2009
GW Locus cM LOD % var Add GW Locus cM LOD % var Add
Main head
(eMH)
C3 C3_1 eMH.C3_1 3.6 rCELMS-40 105.1 14.7 47.9 −10.5 3.3 rCELMS-40 105.1 9.62 38.1 −11.6
  C3_9 eMH.C3_9   CyEM_10 29.8 4.8 10.5 −4.5   CyEM_10 29.8 3.4 7.6 −4.0
  C3_8 eMH.C3_8   CyEM_173 81.0 4.1 8.9 −4.3   CyEM_2 81.8 3.6 6.8 −3.5
  C3_12 eMH.C3_12   e39/m50-690 41.2 3.6 6.6 −3.6   e35/m50-302 47.2 3.3 6.1 −3.1
  C3_2 eMH.C3_2   - - - - -   e32/t81-380 58 3.9 13 6.4
A41 Alt_2 eMH.Alt_2 3.3 e38/m47-158 64.3 6.2 41.4 −8.9 3.2 e38/m47-158 64.3 7.9 32.9 −10.9
  Alt_2 eMH.Alt_2b   p12/m62-150 29.3 3.6 10.7 −5.3   p12/m62-150 29.3 3.3 8.9 −5.7
  Alt_15 eMH.Alt_15   CyEM_248 20.9 3.3 8.9 4.2   CyEM_144 20.3 3.2 7.1 5.1
  Alt_4 eMH.Alt_4   - - - - -   e32/t82-90 35.4 3.4 9.8 5.2
First order head
(eFOH)
C3 C3_1 eFOH.C3_1 3.4 e33/t89-430 104.0 8.9 31.0 −7.1 3.1 rCyEM_223 106.1 7.6 29.9 −10.5
  C3_9 eFOH.C3_9   CyEM_10 29.8 3.8 8.1 −4.1   CyEM_10 29.8 3.5 6.6 −5.1
  C3_12 eFOH.C3_12   e39/m50-690 41.2 3.4 5.6 −3.1   e35/m50-302 47.2 3.1 5.5 −4.8
  C3_2 eFOH.C3_2   - - - - -   e42/m50-176 55.0 3.2 5.1 −4.3
A41 Alt_2 eFOH.Alt_2 3.0 e38/m47-158 64.3 7.2 25.6 −6.7 3.0 e38/m47-158 64.3 6.3 26.7 −10.2
  Alt_2 eFOH.Alt_2b   aCyEM_12 20.5 3.6 11.0 3.8   p12/m62-164 32.1 3.4 8.3 −5.4
  Alt_15 eFOH.Alt_15   CyEM_248 20.9 3.2 9.1 3.3   CyEM_144 20.3 3.6 7.8 5.3
  Alt_6 eFOH.Alt_6   cyre5/m47-160 1.5 3.0 8.3 3.1   cyre5/m47-160 1.5 3.0 5.7 3.4
  Alt_4 eFOH.Alt_4   - - - - -   e33/t89-490 36.0 3.0 6.3 4.2
Second order head
(eSOH)
C3 C3_1 eSOH.C3_1 3.4 e38/t80-630 99.7 7.1 32.2 −9.7 3.2 e32/t81-98 98.0 5.6 22.4 −9.8
  C3_12 eSOH.C3_12   e35/m50-302 47.2 3.4 15.1 −7.1   e35/m50-302 47.2 3.4 18.0 −9.2
  C3_2 eSOH.C3_2   - - - - -   e38/m50-108 59.2 3.2 7.8 5.2
A41 Alt_2 eSOH.Alt_2 3.1 e38/m47-158 64.3 4.9 19.0 −7.6 3.2 e38/m47-158 64.3 6.3 21.4 −8.2
  Alt_15 eSOH.Alt_15   CyEM_248 20.9 3.1 5.9 3.1   CyEM_144 20.3 3.5 9.1 6.4
  Alt_6 eSOH.Alt_6   cyre5/m47-160 1.5 3.1 7.4 3.9   cyre5/m47-160 1.5 3.2 6.1 4.1
  Alt_4 eSOH.Alt_4   - - - - -   e33/t89-490 36.0 3.2 5.9 4.1
  1. Each QTL name is formed by the abbreviated form of the trait followed by the relevant LG. The table indicates genome-wide LOD thresholds (GW) as determined by a permutation test at P ≤ 0.05, the closest linked markers (Locus) and their map location (cM), the estimated LODs at the QTL peak (LOD), the proportions of the total variance explained (% var), and the additive effects (Add).