Table 6 Structural parameters of experimentally determined and predicted 3D structures of PA serine proteases
From: Modeling and structural analysis of PA clan serine proteases
ID | Taxa | Species | Superposed of AA % | RMSD Ã… | Distances between the catalytic triad Ã… | ||
|---|---|---|---|---|---|---|---|
1ARC-A | Bacteria | A.lyticus | 10.6 | 0.932 | 6.4 | 8.2 | 9.7 |
1QY6-A | Bacteria | S. aureus | 16.2 | 0.753 | 7.1 | 8.4 | 9.9 |
1SGC-A | Bacteria | S. griseus | 19.3 | 0.744 | 6.2 | 8.5 | 9.8 |
1TRY-A | Fungi | F. oxysporum | 41.6 | 0.493 | 6.2 | 8.4 | 10.1 |
1EKB-B | Animalia | B. taurus | 41.3 | 0.744 | 6.4 | 8.0 | 9.3 |
1JRS-A | Animalia | B. taurus | 45.3 | 0.642 | 6.5 | 8.4 | 10.3 |
1M9U-A | Animalia | E. fetida | 41.9 | 0.768 | 6.5 | 8.5 | 10.2 |
1SGI-B | Animalia | H. sapiens | 100 | 0.000 | 6.4 | 8.4 | 10.3 |
1A0L-A | Animalia | H. sapiens | 42.3 | 0.552 | 6.4 | 8.3 | 10.3 |
1ABJ-H | Animalia | H. sapiens | 100 | 0.424 | 6.6 | 8.1 | 9.3 |
2ANY-A | Animalia | H. sapiens | 42.4 | 0.541 | 6.3 | 8.3 | 9.8 |
1AO5-A | Animalia | M. musculus | 44.1 | 0.552 | 6.6 | 8.2 | 9.7 |
1DPO-A | Animalia | R. rattus | 45.5 | 0.652 | 6.3 | 7.6 | 9.8 |
1BIT-A | Animalia | S. salar | 46.4 | 0.610 | 6.3 | 9.9 | 9.9 |
1EQ9-A | Animalia | S. invicta | 44.6 | 0.593 | 6.3 | 8.1 | 10.1 |
1BQY-A | Animalia | T. stejnejer | 41.5 | 0.645 | 6.4 | 8.3 | 9.7 |
Mean ± SD of the Cα distances between the triad residues | 6.4±0.01 | 8.4±0.03 | 9.8±0.02 | ||||
PM0075793 | Protozoa | P. falciparum | 15.0 | 1.003 | 6.2 | 8.4 | 9.9 |
PM0075794 | Archaea | P. furiosus | 22.5 | 0.756 | 6.5 | 8.3 | 9.7 |
PM0075795 | Fungi | N. crassa | 13.0 | 1.311 | 6.4 | 9.4 | 10.8 |
PM0075796 | Plantae | A. thaliana | 16.4 | 1.761 | 6.7 | 9.6 | 10.1 |
Mean ± SD of the Cα distances between the triad residues | 6.5±0.06 | 8.9±0.19 | 10.1±0.14 | ||||