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Table 6 Structural parameters of experimentally determined and predicted 3D structures of PA serine proteases

From: Modeling and structural analysis of PA clan serine proteases

ID Taxa Species Superposed of AA % RMSD Å Distances between the catalytic triad Å
1ARC-A Bacteria A.lyticus 10.6 0.932 6.4 8.2 9.7
1QY6-A Bacteria S. aureus 16.2 0.753 7.1 8.4 9.9
1SGC-A Bacteria S. griseus 19.3 0.744 6.2 8.5 9.8
1TRY-A Fungi F. oxysporum 41.6 0.493 6.2 8.4 10.1
1EKB-B Animalia B. taurus 41.3 0.744 6.4 8.0 9.3
1JRS-A Animalia B. taurus 45.3 0.642 6.5 8.4 10.3
1M9U-A Animalia E. fetida 41.9 0.768 6.5 8.5 10.2
1SGI-B Animalia H. sapiens 100 0.000 6.4 8.4 10.3
1A0L-A Animalia H. sapiens 42.3 0.552 6.4 8.3 10.3
1ABJ-H Animalia H. sapiens 100 0.424 6.6 8.1 9.3
2ANY-A Animalia H. sapiens 42.4 0.541 6.3 8.3 9.8
1AO5-A Animalia M. musculus 44.1 0.552 6.6 8.2 9.7
1DPO-A Animalia R. rattus 45.5 0.652 6.3 7.6 9.8
1BIT-A Animalia S. salar 46.4 0.610 6.3 9.9 9.9
1EQ9-A Animalia S. invicta 44.6 0.593 6.3 8.1 10.1
1BQY-A Animalia T. stejnejer 41.5 0.645 6.4 8.3 9.7
Mean ± SD of the Cα distances between the triad residues 6.4±0.01 8.4±0.03 9.8±0.02
PM0075793 Protozoa P. falciparum 15.0 1.003 6.2 8.4 9.9
PM0075794 Archaea P. furiosus 22.5 0.756 6.5 8.3 9.7
PM0075795 Fungi N. crassa 13.0 1.311 6.4 9.4 10.8
PM0075796 Plantae A. thaliana 16.4 1.761 6.7 9.6 10.1
Mean ± SD of the Cα distances between the triad residues 6.5±0.06 8.9±0.19 10.1±0.14