Table 1 Alignment accuracy compared to BWA using simulated reads
From: BarraCUDA - a fast short read sequence aligner using graphics processing units
| Â | BWA | BarraCUDA | ||
|---|---|---|---|---|
| Â | Gap enabled | Gap disabled | Gap enabled | Gap disabled |
Single-end | Â | Â | Â | Â |
% Mapped | 89.95 | 91.01 | 91.42 | 91.14 |
% Error | 0.06 | 0.04 | 0.05 | 0.05 |
Paired-end | Â | Â | Â | Â |
% Mapped | 96.53 | 96.50 | 96.61 | 96.64 |
% Error | 0.04 | 0.04 | 0.06 | 0.06 |