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Table 3 Runtime of BowStrap

From: BowStrap v1.0: Assigning statistical significance to expressed genes using short-read transcriptome data

Dataset

Total core hours

50 M

35.5

25 M

9.1

10 M

6.9

1 M

0.8

0.5 M

0.2

  1. BowStrap was used to generate gene model expression values from a synthetic RNAseq data of 50, 25, 10, 1, and 0.5 million total 46-mer sequence reads. “Total Core Hours” indicates total core hours required to perform 1000 bootstrap-style iterations. Multithread BowStrap decreases total time required approximately linearly with number of processors used, but memory required increases linearly.