TY - JOUR AU - Yuryev, A. AU - Huang, J. AU - Pohl, M. AU - Patch, R. AU - Watson, F. AU - Bell, P. AU - Donaldson, M. AU - Phillips, M. S. AU - Boyce-Jacino, M. T. PY - 2002 DA - 2002// TI - Predicting the success of primer extension genotyping assays using statistical modeling JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/gnf131 DO - 10.1093/nar/gnf131 ID - Yuryev2002 ER - TY - JOUR AU - Housley, D. J. E. AU - Zalewski, Z. A. AU - Beckett, S. E. AU - Venta, P. J. PY - 2006 DA - 2006// TI - Design factors that influence PCR amplification success of cross-species primers among 1147 mammalian primer pairs JO - BMC genomics VL - 7 UR - https://doi.org/10.1186/1471-2164-7-253 DO - 10.1186/1471-2164-7-253 ID - Housley2006 ER - TY - JOUR AU - Andreson, R. AU - Mols, T. AU - Remm, M. PY - 2008 DA - 2008// TI - Predicting failure rate of PCR in large genomes JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn290 DO - 10.1093/nar/gkn290 ID - Andreson2008 ER - TY - JOUR AU - Boyle, B. AU - Dallaire, N. AU - MacKay, J. PY - 2009 DA - 2009// TI - Evaluation of the impact of single nucleotide polymorphisms and primer mismatches on quantitative PCR JO - BMC Biotechnol VL - 9 UR - https://doi.org/10.1186/1472-6750-9-75 DO - 10.1186/1472-6750-9-75 ID - Boyle2009 ER - TY - JOUR AU - Wu, J. S. AU - Lee, C. AU - Wu, C. C. AU - Shiue, Y. L. PY - 2004 DA - 2004// TI - Primer design using genetic algorithm JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth147 DO - 10.1093/bioinformatics/bth147 ID - Wu2004 ER - TY - JOUR AU - Wang, J. AU - Li, K. B. AU - Sung, W. K. PY - 2004 DA - 2004// TI - G-PRIMER: greedy algorithm for selecting minimal primer set JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth259 DO - 10.1093/bioinformatics/bth259 ID - Wang2004 ER - TY - JOUR AU - Yang, C. H. AU - Cheng, Y. H. AU - Chuang, L. Y. AU - Chang, H. W. PY - 2009 DA - 2009// TI - Specific PCR product primer design using memetic algorithm JO - Biotechnol Prog VL - 25 UR - https://doi.org/10.1002/btpr.169 DO - 10.1002/btpr.169 ID - Yang2009 ER - TY - JOUR AU - Robertson, J. M. AU - Walsh-Weller, J. PY - 1998 DA - 1998// TI - An introduction to PCR primer design and optimization of amplification reactions JO - Methods in Molecular Biology VL - 98 ID - Robertson1998 ER - TY - JOUR AU - Rozen, S. AU - Skaletsky, H. PY - 2000 DA - 2000// TI - Primer3 on the WWW for general users and for biologist programmers JO - Methods in Molecular Biology VL - 132 ID - Rozen2000 ER - TY - JOUR AU - Bekaert, M. AU - Teeling, E. C. PY - 2008 DA - 2008// TI - UniPrime: a workflow-based platform for improved universal primer design JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn191 DO - 10.1093/nar/gkn191 ID - Bekaert2008 ER - TY - JOUR AU - Boutros, R. AU - Stokes, N. AU - Bekaert, M. AU - Teeling, E. C. PY - 2009 DA - 2009// TI - UniPrime: a workflow-based platform for improved universal primer design JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkp269 DO - 10.1093/nar/gkp269 ID - Boutros2009 ER - TY - JOUR AU - Untergasser, A. AU - Nijveen, H. AU - Rao, X. AU - Bisseling, T. AU - Geurts, R. AU - Leunissen, J. A. PY - 2007 DA - 2007// TI - Primer3Plus, an enhanced web interface to Primer3 JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm306 DO - 10.1093/nar/gkm306 ID - Untergasser2007 ER - TY - JOUR AU - Chen, S. H. AU - Lin, C. Y. AU - Cho, C. S. AU - Lo, C. Z. AU - Hsiung, C. A. PY - 2003 DA - 2003// TI - Primer Design Assistant (PDA): A web-based primer design tool JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg560 DO - 10.1093/nar/gkg560 ID - Chen2003 ER - TY - JOUR AU - Jong, K. D. PY - 1988 DA - 1988// TI - Learning with genetic algorithms: an overview JO - Mach Learning VL - 3 ID - Jong1988 ER - TY - BOOK AU - Goldgerg, D. E. PY - 1989 DA - 1989// TI - Genetic algorithms in search, optimization, and machine learning PB - Addison-Wesley CY - New York ID - Goldgerg1989 ER - TY - BOOK AU - Holland, J. PY - 1992 DA - 1992// TI - Adaptation in Nature and Artificial Systems ID - Holland1992 ER - TY - BOOK AU - Dawkins, R. PY - 2006 DA - 2006// TI - The selfish gene PB - Oxford University Press CY - USA ID - Dawkins2006 ER - TY - CHAP AU - Merz, P. AU - Freisleben, B. PY - 1997 DA - 1997// TI - A genetic local search approach to the quadratic assignment problem BT - Proceedings of the 7th international conference on genetic algorithms ID - Merz1997 ER - TY - JOUR AU - SantaLucia, J. PY - 1998 DA - 1998// TI - A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics JO - Proc Natl Acad Sci USA VL - 95 UR - https://doi.org/10.1073/pnas.95.4.1460 DO - 10.1073/pnas.95.4.1460 ID - SantaLucia1998 ER - TY - JOUR AU - Pruitt, K. D. AU - Tatusova, T. AU - Klimke, W. AU - Maglott, D. R. PY - 2009 DA - 2009// TI - NCBI Reference Sequences: current status, policy and new initiatives JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkn721 DO - 10.1093/nar/gkn721 ID - Pruitt2009 ER - TY - JOUR AU - Rhead, B. AU - Karolchik, D. AU - Kuhn, R. M. AU - Hinrichs, A. S. AU - Zweig, A. S. AU - Fujita, P. A. AU - Diekhans, M. AU - Smith, K. E. AU - Rosenbloom, K. R. AU - Raney, B. J. PY - 2010 DA - 2010// TI - The UCSC Genome Browser database: update 2010 JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkp939 DO - 10.1093/nar/gkp939 ID - Rhead2010 ER - TY - JOUR AU - Vallone, P. M. AU - Butler, J. M. PY - 2004 DA - 2004// TI - AutoDimer: a screening tool for primer-dimer and hairpin structures JO - Biotechniques VL - 37 ID - Vallone2004 ER - TY - JOUR AU - Navarro, G. PY - 2001 DA - 2001// TI - A guided tour to approximate string matching JO - ACM Comput Surv VL - 33 UR - https://doi.org/10.1145/375360.375365 DO - 10.1145/375360.375365 ID - Navarro2001 ER - TY - JOUR AU - Camacho, C. AU - Coulouris, G. AU - Avagyan, V. AU - Ma, N. AU - Papadopoulos, J. AU - Bealer, K. AU - Madden, T. L. PY - 2009 DA - 2009// TI - BLAST+: architecture and applications JO - BMC Bioinforma VL - 10 UR - https://doi.org/10.1186/1471-2105-10-421 DO - 10.1186/1471-2105-10-421 ID - Camacho2009 ER - TY - BOOK AU - Sambrook, J. AU - Russell, D. W. PY - 2001 DA - 2001// TI - Molecular cloning: a laboratory manual PB - Cold Spring Harbor Laboratory Press CY - New York ID - Sambrook2001 ER -