Skip to main content

Advertisement

Table 1 Consensus derived from binding sites aligned using ClustalW2 (left) and simple sorted (right) multiple sequence alignment algorithms

From: Effect of positional dependence and alignment strategy on modeling transcription factor binding sites

ClustalW2 Alignment Simple Sorted Alignment
-------ATTACACCAAGTACC -------ACCTAAGCTG--
----GGAATTTCCTGTTGATCC ----ATTACACCAAGTACC
-------ACCTAA-GCTG---- -GGAATTTCCTGTTGATCC
CTAAAGGACGTCACATTGC--- CTAAAGGACGTCACATTGC
-------A--TCA---TG---- ----A--AC-T-A--T--C