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Table 2 Comparison between ClustalW2 and simple sorted alignment strategies in all configurations

From: Effect of positional dependence and alignment strategy on modeling transcription factor binding sites

Species ClustalW2 Superior  Z   p≤ 
    % Cases Alignment   
D. melanogaster          0.980 ClustalW2 5.78 0.01
G. gallus          0.000 Simple sorted 6.03 0.01
H. sapiens          0.540 None 0.50 –
M. musculus          0.060 Simple sorted 5.28 0.01
R. norvegicus          1.000 ClustalW2 6.03 0.01
S. cerevisiae          0.125 Simple sorted 4.53 0.01
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BMC Research Notes

ISSN: 1756-0500

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