Skip to main content

Table 2 Distribution of various types of motifs in polymorphic EST-SSRs and genomic-SSRs

From: Characterization and compilation of polymorphic simple sequence repeat (SSR) markers of peanut from public database

Motif EST-SSR (%) Genomic-SSR (%) Total (%)
AT/TA 31 (5.2) 124 (13.6) 155 (10.3)
AG/GA/CT/TC 125 (20.9) 425 (46.7) 550 (36.5)
AC/CA/TG/GT 18 (3.0) 112 (12.3) 130 (8.6)
GC/CG 1 (0.2) 0 (0.0) 1 (0.1)
AAG/AGA/GAA/CTT/TTC/TCT 126 (21.1) 57 (6.3) 183 (12.1)
AAT/ATA/TAA/ATT/TTA/TAT 55 (9.2) 109 (12.0) 164 (10.9)
ATG/TGA/GAT/CAT/ATC/TCA 47 (7.9) 18 (2.0) 65 (4.3)
AAC/ACA/CAA/GTT/TTG/TGT 46 (7.7) 34 (3.7) 80 (5.3)
ACC/CCA/CAC/GGT/GTG/TGG 32 (5.4) 10 (1.1) 42 (2.8)
AGG/GGA/GAG/CCT/CTC/TCC 35 (5.9) 4 (0.4) 39 (2.6)
AGT/GTA/TAG/ACT/CTA/TAC 9 (1.5) 5 (0.5) 14 (0.9)
AGC/GCA/CAG/GCT/CTG/TGC 30 (5.0) 4 (0.4) 34 (2.3)
ACG/CGA/GAC/CGT/GTC/TCG 14 (2.3) 2 (0.2) 16 (1.1)
GGC/GCG/CGG/GCC/CCG/CGC 28 (4.7) 7 (0.8) 35 (2.3)
Total 597 911 1,508