Table 2 Distribution of various types of motifs in polymorphic EST-SSRs and genomic-SSRs
Motif | EST-SSR (%) | Genomic-SSR (%) | Total (%) |
|---|---|---|---|
AT/TA | 31 (5.2) | 124 (13.6) | 155 (10.3) |
AG/GA/CT/TC | 125 (20.9) | 425 (46.7) | 550 (36.5) |
AC/CA/TG/GT | 18 (3.0) | 112 (12.3) | 130 (8.6) |
GC/CG | 1 (0.2) | 0 (0.0) | 1 (0.1) |
AAG/AGA/GAA/CTT/TTC/TCT | 126 (21.1) | 57 (6.3) | 183 (12.1) |
AAT/ATA/TAA/ATT/TTA/TAT | 55 (9.2) | 109 (12.0) | 164 (10.9) |
ATG/TGA/GAT/CAT/ATC/TCA | 47 (7.9) | 18 (2.0) | 65 (4.3) |
AAC/ACA/CAA/GTT/TTG/TGT | 46 (7.7) | 34 (3.7) | 80 (5.3) |
ACC/CCA/CAC/GGT/GTG/TGG | 32 (5.4) | 10 (1.1) | 42 (2.8) |
AGG/GGA/GAG/CCT/CTC/TCC | 35 (5.9) | 4 (0.4) | 39 (2.6) |
AGT/GTA/TAG/ACT/CTA/TAC | 9 (1.5) | 5 (0.5) | 14 (0.9) |
AGC/GCA/CAG/GCT/CTG/TGC | 30 (5.0) | 4 (0.4) | 34 (2.3) |
ACG/CGA/GAC/CGT/GTC/TCG | 14 (2.3) | 2 (0.2) | 16 (1.1) |
GGC/GCG/CGG/GCC/CCG/CGC | 28 (4.7) | 7 (0.8) | 35 (2.3) |
Total | 597 | 911 | 1,508 |