Figure 4
From: BetaSearch: a new method for querying β-residue motifs
Matching the Top7 and CLC β -sheets (Case Study 1). The amphipathic query (a) is a characterisation of the repeating amphipathic region in the Top7 protein (bold). This query was matched only in the CLC protein [PDB: 1LCL]. A structural alignment (b) around the query-matching regions of both proteins where the strand and sidechain directions are conserved. The structural alignment was generated using the PyMOL “align” command: “fetch 1QYS; fetch 1LCL; align 1QYS & (resi 8+19+50+81+90), 1LCL & (resi 20+93+102+110)”.