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Table 2 Classification of 2-OG dependent dioxygenases

From: Distribution and prediction of catalytic domains in 2-oxoglutarate dependent dioxygenases

 

Family (This work)*

REACTION

 

 Demethylation

ALKB, COLY

 Chlorinating

CHLO

 Ring closure (cyclization)

CYCL

 Desaturation

CLAS, CYCL, FLAV

 Sulfate cleavage

TDLP

 Ring expansion

DACS

 Ether bond cleavage

TFDA

 Hydroxylation

NUHY(THYD,THYE,XANT), CP3H,CP4H,HP4H,ARGI,ASPA,ECTO,PHYT,GBBH,HYOS, PTLH

SUBSTRATE

 

 Amino acid/protein/derivative

 

 Arginine

ARGI

 Aspartyl; Asparagine

ASPA

 Lysine

COLY, HILY

 Proline

CP3H,CP4H,HP4H

 Sulfonic acids (taurine), isethionate, taurocholate

SULF (TDLP)

 gamma-butyrobetaine

GBBH

 Collagen

CP3H,CP4H,COLY

 Nucleotide/ nucleoside

 

 Thymidine

THYD

 Thymine

THYE

 Xanthine

XANT

 Misc. organic

 

 Pro-clavaminate

CLAS

 Deacetoxycephalosporin

DACS

 Ectoine

ECTO

 2 S-flavanones

FLAV

 Gibberellins

GIAC

 Hyoscyamine

HYOS

 Phytanoyl-CoA

PHYT

 PAA based pesticides/ herbicides

TFDA

 Cyclopentane

PTLH

 Aliphatic sulfate esters

ATSK

 Translation in eukaryotes (eIF2α)

OGFD

  1. (*) Note: Details of protein sequences used in this analysis (uniprot & PDB ids, references) are included as Additional file 1 : Table S1.