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Table 3 Comparative analysis of catalytic domains of template sequences *

From: Distribution and prediction of catalytic domains in 2-oxoglutarate dependent dioxygenases

 

InterPro

PFAM

SMART

PROSITE

Group 1

    

 FLAV

Oxoglutarate/Fe-dep_oxygenase

2OG-FeII_Oxy

 

FE2OG_OXY

 

Isopenicillin-N_synthase

   

 GIAC

Oxoglutarate/Fe-dep_oxygenase

2OG-FeII_Oxy

 

FE2OG_OXY

 

Isopenicillin-N_synthase

   

 HYOS

Oxoglutarate/Fe-dep_oxygenase

2OG-FeII_Oxy

 

FE2OG_OXY

 

Isopenicillin-N_synthase

   

 DACS

Isopenicillin-N_synth_CS

2OG-FeII_Oxy

 

FE2OG_OXY

 

Oxoglutarate/Fe-dep_oxygenase

  

IPNS_1

    

IPNS_2

 THYE

Oxoglutarate/Fe-dep_oxygenase

2OG-FeII_Oxy

 

FE2OG_OXY

Group 2

    

 TDLP

Taurine_dOase

TauD

  

 ATSK

Taurine_dOase

TauD

  

 TFDA

Taurine_dOase

TauD

  

 XANT

Taurine_dOase

TauD

  

Group 3

    

 PHYT

Phytyl_CoA_dOase

PhyH

  

 PTLH

Phytyl_CoA_dOase

PhyH

  

 CP4H

Oxoglutarate/Fe-dep_oxygenase

2-OG-FeII_Oxy

P4Hc

FE2OG_OXY

 

Pro_4_hyd_alph

P4Ha_N

ShKT

TPR

 

Pro_4_hyd_alph_N

ShK

 

TPR_REGION

 

ShK_toxin

   
 

TPR-contain

   
 

TPR-like_helical

   
 

TPR_repeat

   

 HP4H

Oxoglutarate/Fe-dep_oxygenase

2OG-FeII_Oxy

P4Hc

FE2OG_OXY

 

Pro_4_hyd_alph

Cupin_4

 

ZF_MYND_1

 

Cupin_JmjC

zf-MYND

 

ZF_MYND_2

 

Znf_MYND

Ofd1_CTDD

  
 

Oxoglutarate/Fe-dep_Oase_C

   
  1. (*) Note: Complete domain analysis of template dataset is included as Additional file2: Table S2.