Microsatellite markers for identification and parentage analysis in the European wild boar (Sus scrofa)

Costa, Vânia; Pérez-González, Javier; Santos, Pedro; Fernández-Llario, Pedro; Carranza, Juan; Zsolnai, Attila; Anton, István; Buzgó, József; Varga, Gyula; Monteiro, Nuno; Beja-Pereira, Albano

doi:10.1186/1756-0500-5-479

BMC Research Notes

Table 1 Summary statistics results for the three populations (HG – Hungary, PT – Portugal, SP – Spain) using the 14 microsatellite loci: number of individuals analyzed (N), number of alleles of each locus (k), observed heterozygosity (Hobs), expected heterozygosity (HExp), average non-exclusion probability for the first parent (NE-1P), average non-exclusion probability for the second parent (NE-2P), average non-exclusion probability for a candidate parent pair (NE-PP), average non-exclusion probability for identity of two unrelated individuals (NE-I), average non-exclusion probability for identity of two siblings (NE-SI), and estimated null allele frequency (F(null))

From: Microsatellite markers for identification and parentage analysis in the European wild boar (Sus scrofa)

		Sw24	S0155	Sw936	Sw2410	S005	Sw632	Sw857	S0226	Sw72	Sw240	S0068	S0101	Sw122	Sw2008
N	HG	49	47	49	49	46	49	49	47	47	48	46	48	43	47
	PT	72	72	72	72	69	71	71	70	72	72	66	72	72	72
	SP	46	46	46	46	43	45	46	46	46	46	43	46	46	46
k	HG	6	6	7	6	14	7	3	4	5	4	8	8	6	3
	PT	4	4	4	6	10	5	5	3	3	5	9	5	5	3
	SP	5	4	5	4	12	4	5	4	6	5	9	6	4	4
Hobs	HG	0.9	0.5	0.6	0.65	0.85	0.75	0.5	0.75	0.833	0.65	0.895	1	0.733	0.444
	PT	0.415	0.61	0.537	0.659	0.718	0.5	0.575	0.268	0.415	0.732	0.861	0.39	0.317	0.585
	SP	0.773	0.364	0.636	0.636	0.909	0.762	0.545	0.409	0.773	0.773	0.7	0.591	0.545	0.636
Hexp	HG	0.741	0.615	0.715	0.713	0.901	0.679	0.396	0.737	0.754	0.596	0.868	0.817	0.791	0.452
	PT	0.418	0.71	0.511	0.749	0.706	0.536	0.501	0.259	0.494	0.712	0.776	0.369	0.326	0.662
	SP	0.723	0.411	0.634	0.606	0.906	0.721	0.508	0.504	0.784	0.722	0.827	0.537	0.624	0.532
NE-1P	HG	0.686	0.789	0.693	0.712	0.385	0.736	0.925	0.71	0.67	0.817	0.475	0.568	0.631	0.903
	PT	0.912	0.723	0.872	0.663	0.681	0.853	0.876	0.967	0.881	0.718	0.623	0.932	0.945	0.786
	SP	0.717	0.918	0.796	0.82	0.375	0.727	0.868	0.877	0.632	0.704	0.549	0.848	0.809	0.857
NE-2P	HG	0.513	0.608	0.506	0.533	0.237	0.556	0.826	0.54	0.49	0.652	0.308	0.391	0.453	0.805
	PT	0.781	0.555	0.787	0.486	0.492	0.718	0.777	0.877	0.793	0.55	0.445	0.812	0.818	0.639
	SP	0.549	0.793	0.649	0.691	0.23	0.562	0.713	0.772	0.454	0.526	0.373	0.686	0.673	0.701
NE-PP	HG	0.328	0.408	0.3	0.341	0.083	0.358	0.721	0.369	0.301	0.475	0.137	0.205	0.269	0.696
	PT	0.642	0.381	0.677	0.3	0.277	0.566	0.659	0.787	0.684	0.374	0.257	0.686	0.683	0.49
	SP	0.374	0.662	0.486	0.543	0.081	0.394	0.545	0.649	0.272	0.337	0.19	0.507	0.521	0.534
NE-I	HG	0.123	0.19	0.12	0.133	0.025	0.15	0.434	0.133	0.109	0.22	0.042	0.069	0.093	0.389
	PT	0.382	0.144	0.35	0.109	0.114	0.284	0.344	0.576	0.36	0.141	0.09	0.437	0.472	0.193
	SP	0.14	0.398	0.213	0.248	0.024	0.146	0.289	0.34	0.092	0.128	0.063	0.262	0.231	0.272
NE-SI	HG	0.419	0.497	0.431	0.436	0.317	0.456	0.665	0.424	0.411	0.514	0.338	0.369	0.391	0.627
	PT	0.639	0.435	0.585	0.407	0.43	0.556	0.589	0.766	0.596	0.433	0.39	0.677	0.707	0.472
	SP	0.432	0.649	0.493	0.516	0.313	0.434	0.574	0.589	0.39	0.429	0.363	0.553	0.503	0.558
F(null)	HG	−0.1106	0.03	0.0296	0.0586	0.0341	−0.0317	0.0208	0.0012	−0.0237	−0.0763	−0.0072	−0.0394	0.0259	0.0825
	PT	0.0115	0.0105	0.1312	0.0755	−0.0173	0.0174	−0.0431	−0.0293	−0.0235	−0.0014	−0.0468	0.0618	0.0377	0.1476
	SP	−0.0673	−0.0396	−0.0143	−0.0969	−0.0029	0.027	−0.0549	−0.0013	0.0021	−0.0128	0.0391	−0.1238	0.0292	−0.0785

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ISSN: 1756-0500

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