Table 1 List of Genes, their SNPs and positions, and genotyping data based on the whole cohort (460 subjects)
From: Custom genotyping for substance addiction susceptibility genes in Jordanians of Arab descent
Gene | Gene location | SNP _ID | Positiona | SNP | SNP location | Discrepancy rateb | Call ratec |
|---|---|---|---|---|---|---|---|
DRD1 | 5q35.1 | rs5326 | 174802802 | G > A | 5'-UTR | 0.25% | 99% |
DRD2 | 11q23 | rs1800496 | 112788698 | C > T | Exon 7 | 0.00% | 100% |
rs6277 | 112788669 | T > C | 3'-UTR | 0.15% | 99% | ||
rs2511521 | 112790509 | T > C | Intron 4 | 0.00% | 100% | ||
rs12574471 | 112821446 | C > T | Intron 1 | 0.00% | 100% | ||
rs2283265 | 112790746 | G > T | Intron 4 | 0.00% | 100% | ||
rs6279 | 112786283 | C > G | 3'-UTR | 0.00% | 100% | ||
rs4581480 | 112829684 | T > C | 5'-UTR | 0.00% | 100% | ||
rs4350392 | 112840927 | C > A | 5'-UTR | 0.00% | 100% | ||
rs10891556 | 112857971 | G > T | 5'-UTR | 0.00% | 100% | ||
rs7103679 | 112808884 | C > T | Intron 1 | 0.00% | 100% | ||
rs4938019 | 112846601 | T > C | Intron 1 | 0.00% | 100% | ||
rs1076560 | 112788898 | G > T | Intron 5 | 0.00% | 100% | ||
rs2075654 | 112794276 | G > A | Intron 2 | 0.00% | 100% | ||
rs7125415 | 112815891 | C > T | 5'-UTR | 0.00% | 100% | ||
rs4648317 | 112836742 | C > T | Intron 1 | 0.00% | 100% | ||
rs1125394 | 112802395 | A > G | Intron 1 | 0.00% | 100% | ||
rs4648318 | 112818599 | A > G | Intron 1 | 0.00% | 100% | ||
rs12363125 | 112791126 | A > G | Intron 5 | 0.00% | 100% | ||
rs2734836 | 112796449 | G > A | Intron 2 | 0.05% | 99% | ||
rs12364283 | 112852165 | T > C | 5'-UTR | 0.00% | 100% | ||
rs1799978 | 112851561 | A > G | 5'-UTR | 0.00% | 100% | ||
rs6275 | 112788687 | C > T | Exon 7 | 0.15% | 99% | ||
rs1800497 | 112776038 | C > T | Exon 8 | 0.00% | 100% | ||
rs1079597 | 112801496 | A > G | Intron 1 | 0.00% | 100% | ||
| Â | Â | rs1799732 | 112851462 | -C | 5'-UTR | 0.00% | 100% |
|  |  | rs1800498 | 112796798 | C > T | Intron 2 | 0.00% | 100% |
DRD3 | 3q13.3 | rs6280 | 115373505 | C > T | Exon 1 | 0.07% | 99% |
DRD4 | 11p15.5 | rs3758653 | 626399 | C > T | 5'-UTR | 0.05% | 99% |
DRD5 | 4p16.1 | rs10033951 | 9388678 | C > T | 5'-UTR | 0.05% | 99% |
SLC6A3 | 5p15.3 | rs2963238 | 1497427 | A > C | Intron 1 | 0.12% | 99% |
rs6876225 | 1459036 | C > A | Intron 11 | 0.00% | 100% | ||
rs11564773 | 1449813 | A > G | Intron 14 | 0.00% | 100% | ||
rs1042098 | 1447815 | T > C | 3'-UTR | 0.15% | 99% | ||
BDNF1 | 11p13 | rs7103873 | 27656893 | C > G | Intron 1 | 0.07% | 99% |
rs1401635 | 27650567 | C > G | Intron 1 | 0.00% | 100% | ||
rs11030102 | 27638172 | C > G | Intron 1 | 0.00% | 100% | ||
rs17309930 | 27705069 | A > C,G > T | Intron 1 | 0.07% | 99% | ||
rs6265 | 27636492 | G > A | 3'-UTR | 0.00% | 100% | ||
COMT | 22q11.21 | rs737866 | 18310109 | T > C | 5'-UTR | 0.00% | 100% |
|  |  | rs4680 | 18331271 | A > G | Exon 2 | 0.00% | 100% |