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Table 4 Table shows regions of the genome considered biased after whole genome amplification

From: Novel approach for deriving genome wide SNP analysis data from archived blood spots

Chromosome

Start Position

End Position

Number of Animals

1

9,948,603

10,128,760

137

1

18,418,830

18,641,391

115

2

4,278

9,124,477

163

2

1,632,514

3,559,307

106

2

73,598,562

106,082,295

125

4

120,957,396

128,105,906

129

7

48,160

11,045,685

135

7

58,390,175

64,149,907

135

9

27,950

7,940,294

118

11

52,003

6,263,717

141

11

60,971,377

68,843,993

179

14

137,688,899

148,678,088

185

16

46,422,064

58,631,201

165

  1. SNP chip data were re-analysed and specific regions of the genome that consistently failed to amplify were noted. Consistent failure was considered to have occurred if there was no call for 100 animals or more.
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BMC Research Notes

ISSN: 1756-0500

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