From: The bench scientist's guide to statistical analysis of RNA-Seq data
 | DESeq | edgeR | Raw Counts | RPKM | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
 | log2 FC | Padj | log2 FC | Padj | con1 | con2 | con3 | trt1 | trt2 | trt3 | Control | Treatment |
Genes turned on | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Glyma18g02680 | Inf | 0.0224 | 27.39 | 0.0187 | 0 | 0 | 0 | 5 | 1 | 4 | 0 | 0.08 ± 0.032 |
Glyma01g41980 | Inf | 0.0331 | 27.26 | 0.0187 | 0 | 0 | 0 | 3 | 4 | 2 | 0 | 0.30 ± 0.206 |
Glyma11g04880 | Inf | 0.0324 | 27.25 | 0.0187 | 0 | 0 | 0 | 5 | 2 | 2 | 0 | 0.17 ± 0.054 |
Glyma16g06500 | Inf | 0.0320 | 27.24 | 0.0326 | 0 | 0 | 0 | 5 | 1 | 3 | 0 | 0.14 ± 0.057 |
Glyma12g05780 | Inf | 0.0488 | 27.08 | 0.0326 | 0 | 0 | 0 | 3 | 1 | 4 | 0 | 0.06 ± 0.030 |
Genes turned off | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Glyma07g02590 | -Inf | 0.0011 | −28.11 | 0.0004 | 7 | 4 | 5 | 0 | 0 | 0 | 0.20 ± 0.050 | 0 |
Glyma17g17930 | -Inf | 0.0011 | −28.12 | 0.0004 | 3 | 5 | 8 | 0 | 0 | 0 | 0.17 ± 0.084 | 0 |
Glyma17g34230 | -Inf | 0.0016 | −28.02 | 0.0006 | 9 | 3 | 3 | 0 | 0 | 0 | 0.54 ± 0.292 | 0 |
Glyma12g14620 | -Inf | 0.0052 | −27.71 | 0.0035 | 3 | 5 | 4 | 0 | 0 | 0 | 0.57 ± 0.372 | 0 |
Glyma03g37640 | -Inf | 0.0075 | −27.56 | 0.0061 | 4 | 2 | 5 | 0 | 0 | 0 | 0.14 ± 0.013 | 0 |