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Table 1 Nucleotide analyses of the ompA gene and surrounding loci

From: Nucleotide and phylogenetic analyses of the Chlamydia trachomatis ompA gene indicates it is a hotspot for mutation

Loci Gene Distance from ompAA #nt #Δ nt sites %Δ nt sites dN dS dN/dS ts/tv
676 CT676 4090-3803 347 16 4.61 0.003 0.065 0.05 8.6
680 rs2 781-370 412 40 9.71 0.015 0.112 0.13 2.9
680-1   369-1 399 54 13.53 ---- ---- ---- 2.1
681 ompA ---- 1194 341 28.56 0.076 0.419 0.18 1.0
681-2   1-607 608 47 7.73 ---- ---- ---- 1.0
682B pbpB 608-810 208 15 7.21 0.005 0.082 0.06 2.6
682C pbpB 1332-1772 442 17 3.85 0.004 0.030 0.13 3.8
687 yfhO2 8873-9229 357 9 2.52 0.002 0.026 0.08 ----D
HKE    3096 23 0.74 0.001 0.002 0.61 10.0
  1. ADistance based on serovar D/UW-3 genome
  2. B5' end of gene
  3. CMiddle of gene
  4. DAll 9 polymorphisms were transitions
  5. EHousekeeping gene data from Brunelle and Sensabaugh, 2006 [8]